/// <summary>
/// Validate Cancelling submitted Job.
/// Input Data :Valid search query, Database value and program value.
/// Output Data : Validation of Cancelling submitted Job.
/// </summary>
/// Invalidated the test case for the Bug 115
public void ValidateCancelSubmittedJob()
{
// Gets the search query parameter and their values.
string querySequence = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.QuerySequency);
string queryDatabaseValue = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseValue);
string queryProgramValue = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramValue);
string queryDatabaseParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.DatabaseParameter);
string queryProgramParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.AzureBlastResultsNode, Constants.ProgramParameter);
// Set Blast Parameters
IBlastServiceHandler service = null;
try
{
service = new AzureBlastHandler();
BlastParameters queryParams = new BlastParameters();
queryParams.Add(queryDatabaseParameter, queryDatabaseValue);
queryParams.Add(queryProgramParameter, queryProgramValue);
Dictionary <string, object> testCaseParms = new Dictionary <string, object>();
testCaseParms.Add(Constants.BlastParmsConst, queryParams);
testCaseParms.Add(Constants.QuerySeqString, querySequence);
// Get request identifier
TestCaseParameters parameters = new TestCaseParameters(
Constants.AzureWebServiceCancelSubmitRequestTest, null,
GetRequestIdentifier, testCaseParms);
object resultsObject = _TestCaseSimulator.Simulate(parameters).Result;
// Cancel subitted job.
bool result = service.CancelRequest(resultsObject as string);
// validate the cancelled job.
Assert.IsTrue(result);
Console.WriteLine(string.Format(null,
"Azure Blast BVT : Submitted job cancelled was successfully.",
queryProgramValue));
}
finally
{
if (service != null)
{
((IDisposable)service).Dispose();
}
}
}
public void ValidateBioHPCCtor()
{
// Gets the search query parameter and their values.
string alphabetName = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode,
Constants.AlphabetNameNode);
string querySequence = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode,
Constants.QuerySequency);
string queryDatabaseValue = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode,
Constants.DatabaseValue);
string email = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode,
Constants.EmailAdress);
string queryProgramValue = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode,
Constants.ProgramValue);
string queryDatabaseParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode,
Constants.DatabaseParameter);
string queryProgramParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode,
Constants.ProgramParameter);
string expect = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode, Constants.Expectparameter);
string emailNotify = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode, Constants.EmailNotifyParameterNode);
string jobName = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode, Constants.JobNameParameterNode);
string expectValue = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode, Constants.ExpectNode);
string emailNotifyValue = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode, Constants.EmailNotifyNode);
string jobNameValue = _utilityObj._xmlUtil.GetTextValue(
Constants.BioHPCAsynchronousResultsNode, Constants.JobNameNode);
// Set Blast Parameters
BlastParameters queryParams = new BlastParameters();
IBlastServiceHandler service = null;
object resultsObject = null;
try
{
service = new BioHPCBlastHandler();
ConfigParameters configParameters = new ConfigParameters();
configParameters.EmailAddress = email;
configParameters.Password = String.Empty;
configParameters.UseBrowserProxy = true;
service.Configuration = configParameters;
// Add mandatory parameter values to search query parameters.
queryParams.Add(queryDatabaseParameter, queryDatabaseValue);
queryParams.Add(queryProgramParameter, queryProgramValue);
queryParams.Add(expect, expectValue);
queryParams.Add(emailNotify, emailNotifyValue);
queryParams.Add(jobName, jobNameValue);
Dictionary <string, object> testCaseParms = new Dictionary <string, object>();
testCaseParms.Add(Constants.BlastParmsConst, queryParams);
testCaseParms.Add(Constants.QuerySeqString, querySequence);
testCaseParms.Add(Constants.AlphabetString, alphabetName);
testCaseParms.Add(Constants.EmailString, email);
// Get request Identifier
TestCaseParameters parameters = new TestCaseParameters(
Constants.BioHPCRequestIdentifierForDnaSeqTest,
null, GetRequestIdentifier, testCaseParms);
resultsObject = _TestCaseSimulator.Simulate(parameters).Result;
Assert.IsNotNull(resultsObject as string);
}
catch (WebException ex)
{
Assert.Fail();
Console.WriteLine(string.Format((IFormatProvider)null,
"BioHPC Blast Bvt : Connection not successful with error '{0}'",
ex.Message));
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"BioHPC Blast Bvt : Connection not successful with error '{0}'",
ex.Message));
}
finally
{
if (service != null)
{
((IDisposable)service).Dispose();
}
}
}
public void EBIWuBlastResultsWithQueryParams()
{
// Gets the search query parameter and their values.
string alphabetName = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.AlphabetNameNode);
string querySequence = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.QuerySequency);
string queryDatabaseValue = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.DatabaseValue);
string emailParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.Emailparameter);
string email = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.EmailAdress);
string queryProgramValue = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.ProgramValue);
string queryDatabaseParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.DatabaseParameter);
string queryProgramParameter = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.ProgramParameter);
string expectedHitId = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.HitID);
string expectedAccession = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.HitAccession);
string expectedResultCount = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.ResultsCount);
string expectedHitsCount = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.HitsCount);
string expectedEntropyStatistics = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.EntropyStatistics);
string expectedKappaStatistics = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.KappaStatistics);
string expectedLambdaStatistics = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.LambdaStatistics);
string expectedLength = _utilityObj._xmlUtil.GetTextValue(
Constants.EbiAsynchronousResultsNode, Constants.Length);
// Set Blast Parameters
BlastParameters queryParams = new BlastParameters();
queryParams.Add(queryDatabaseParameter, queryDatabaseValue);
queryParams.Add(queryProgramParameter, queryProgramValue);
queryParams.Add(emailParameter, email);
Dictionary <string, object> testCaseParms = new Dictionary <string, object>();
testCaseParms.Add(Constants.BlastParmsConst, queryParams);
testCaseParms.Add(Constants.QuerySeqString, querySequence);
testCaseParms.Add(Constants.AlphabetString, alphabetName);
TestCaseParameters parameters = null;
object resultsObject = null;
parameters = new TestCaseParameters(Constants.EBiFetchResultASyncTestNode, null,
FetchResultsASync, testCaseParms);
resultsObject = _TestCaseSimulator.Simulate(parameters).Result;
// Validate blast results.
Assert.IsNotNull(resultsObject);
List <BlastResult> eBlastResults = resultsObject as List <BlastResult>;
Assert.AreEqual(eBlastResults.Count.ToString(
(IFormatProvider)null), expectedResultCount);
Assert.AreEqual(eBlastResults[0].Records.Count.ToString((
IFormatProvider)null), expectedResultCount);
BlastSearchRecord record = eBlastResults[0].Records[0];
Assert.AreEqual(record.Statistics.Kappa.ToString(
(IFormatProvider)null), expectedKappaStatistics);
Assert.AreEqual(record.Statistics.Lambda.ToString(
(IFormatProvider)null), expectedLambdaStatistics);
Assert.AreEqual(record.Statistics.Entropy.ToString(
(IFormatProvider)null), expectedEntropyStatistics);
Assert.AreEqual(record.Hits.Count.ToString(
(IFormatProvider)null), expectedHitsCount);
Hit hit = record.Hits[0];
Assert.AreEqual(hit.Accession, expectedAccession);
Assert.AreEqual(hit.Length.ToString((IFormatProvider)null), expectedLength);
Assert.AreEqual(hit.Id.ToString((IFormatProvider)null), expectedHitId);
Assert.AreEqual(hit.Hsps.Count.ToString((IFormatProvider)null),
expectedResultCount);
Console.WriteLine(string.Format((IFormatProvider)null,
"Ebi Blast BVT: Hits count '{0}'.", eBlastResults.Count));
Console.WriteLine(string.Format((IFormatProvider)null,
"Ebi Blast BVT: Accession '{0}'.", hit.Accession));
Console.WriteLine(string.Format((IFormatProvider)null,
"Ebi Blast BVT: Hit Id '{0}'.", hit.Id));
Console.WriteLine(string.Format((IFormatProvider)null,
"Ebi Blast BVT: Hits Count '{0}'.", hit.Hsps.Count));
}
