public void validate_data_from_tsv()
{
int linenumber = 5;
string line;
string[] row;
Stream stream = StreamFinder.GetFileStreamFromResources("Modeling/Spectroscopy/Resources/Spectra.txt", "Vts");
var testSpectra = SpectralDatabase.GetSpectraFromFile(stream, true);
var testDictionary = testSpectra.ToDictionary();
stream = StreamFinder.GetFileStreamFromResources("Modeling/Spectroscopy/Resources/Spectra.txt", "Vts");
using (StreamReader readFile = new StreamReader(stream))
{
// read n lines (there is one line of header so
for (int i = 0; i <= linenumber; i++)
{
readFile.ReadLine();
}
// get a line from the stream and split the data
line = readFile.ReadLine();
row = line.Split('\t');
}
Assert.AreEqual(testDictionary["Hb"].Wavelengths[linenumber], Convert.ToDouble(row[0]));
// dc: this would be only for MolarExtinctionCoefficient or FractionalExtinctionCoefficient, not MolarAbsorptionCoefficient or FractionalAbsorptionCoefficient
// multiply the value by ln(10)
// double k = Math.Log(10);
double k = 1D;
double spectra = Convert.ToDouble(row[1]) * k;
// test that the values in the text stream match the ones in the object
Assert.AreEqual(testDictionary["HbO2"].Spectrum[linenumber], spectra);
spectra = Convert.ToDouble(row[2]) * k;
Assert.AreEqual(testDictionary["Hb"].Spectrum[linenumber], spectra);
}
public void validate_loading_spectral_database_and_header_from_tsv_no_conversion()
{
Stream stream = StreamFinder.GetFileStreamFromResources("Modeling/Spectroscopy/Resources/Spectra.txt", "Vts");
var testSpectra = SpectralDatabase.GetSpectraFromFile(stream, false);
var testDictionary = testSpectra.ToDictionary();
testDictionary.WriteToJson("dictionary5.txt");
Assert.IsTrue(FileIO.FileExists("dictionary5.txt"));
}
public void validate_Loading_Spectral_Database_and_header_from_tsv_in_resources()
{
Stream stream = StreamFinder.GetFileStreamFromResources("Modeling/Spectroscopy/Resources/Spectra.txt", _assemblyName);
var testSpectra = SpectralDatabase.GetSpectraFromFile(stream, true);
var testDictionary = testSpectra.ToDictionary();
testDictionary.WriteToJson("dictionary4.txt");
Assert.IsTrue(FileIO.FileExists("dictionary4.txt"));
}