private static Expression <Func <ITaxonNamePart, bool> > MatchResolved(SpeciesPartType rank) => p => (p.Rank == rank) && (p.IsResolved || !p.IsAbbreviated);
public void TaxonNamePart_WithValidNodeParameterInConstructor_ShouldReturnValidObject(string nodeString, SpeciesPartType taxonRank, string fullName, string taxonName, string id, bool abbreviated)
{
// Arrange
var document = new XmlDocument();
document.LoadXml(nodeString);
// Act
var taxonNamePart = new TaxonNamePart(document.DocumentElement);
// Assert
Assert.IsNotNull(taxonNamePart, "Object should not be null.");
Assert.AreEqual(abbreviated, taxonNamePart.IsAbbreviated, "Taxon name part should " + (abbreviated ? "not " : string.Empty) + "be abbreviated.");
Assert.AreEqual(taxonRank, taxonNamePart.Rank, $"Rank should be '{taxonRank}'.");
Assert.AreEqual(taxonName, taxonNamePart.Name, $"Name should be '{taxonName}'.");
Assert.AreEqual(fullName, taxonNamePart.FullName, $"Full Name should be '{fullName}'.");
Assert.AreEqual(id, taxonNamePart.Id, $"Id should be '{id}'.");
}
private void ResolveSubgenericByGenusAndLowerMatches(IQueryable <ITaxonName> taxonNames, SpeciesPartType rank)
{
if (rank <= SpeciesPartType.Genus)
{
return;
}
var matchResolved = MatchResolved(rank);
var matchNotResolved = MatchNotResolved(rank);
var taxaWithResolvedPart = taxonNames.Where(t => t.Parts.Any(this.matchResolvedGenera) && t.Parts.Any(matchResolved))
.ToList();
var taxaWithNotResolvedPart = taxonNames.Where(t => t.Parts.Any(this.matchResolvedGenera) && t.Parts.Any(matchNotResolved) && t.Parts.Any(p => p.Rank > rank));
var messageBag = new StringBuilder();
foreach (var taxon in taxaWithNotResolvedPart)
{
messageBag.Append(taxon);
messageBag.AppendLine();
try
{
string genus = taxon.Parts.First(p => p.Rank == SpeciesPartType.Genus).FullName;
var query = taxaWithResolvedPart.Where(t => t.Parts.Single(p => p.Rank == SpeciesPartType.Genus).FullName == genus);
foreach (var part in taxon.Parts.Where(p => p.Rank > rank))
{
if (!part.IsAbbreviated || part.IsResolved)
{
query = query.Where(t => t.Parts.FirstOrDefault(p => p.Rank == part.Rank)?.FullName == part.FullName);
}
}
var matches = query.Distinct(new TaxonNameContentEqualityComparer()).ToArray();
if (matches.Length == 1)
{
var match = matches[0];
var taxonNamePartValue = match.Parts.First(p => p.Rank == rank).FullName;
foreach (var taxonNamePart in taxon.Parts)
{
if (taxonNamePart.Rank == rank)
{
taxonNamePart.FullName = taxonNamePartValue;
taxonNamePart.IsModified = true;
messageBag.AppendFormat("\tSubstitution ({0}):", taxonNamePart.Rank);
messageBag.AppendFormat("\t\t{0}", taxonNamePartValue);
messageBag.AppendLine();
break;
}
}
}
}
catch
{
}
messageBag.AppendLine();
}
this.logger?.Log(messageBag?.ToString());
}
public static string ToRankString(this SpeciesPartType type)
{
return(type.ToString().ToLower());
}
