public void SpeciesElement(Hashtable attrs)
{
Species species = new Species(this.model, attrs);
SpeciesType speciesType = null;
Compartment compartment = null;
double initialAmount = 0;
double initialConcentration = 0;
String substanceUnits = null;
Boolean hasOnlySubstanceUnits = false;
Boolean boundaryCondition = false;
Boolean constant = false;
if (attrs.Contains("initialamount"))
initialAmount = (double)(Double.Parse((String)attrs["initialamount"]));
if (attrs.Contains("initialconcentration"))
initialConcentration = (double)(Double.Parse((String)attrs["initialconcentration"]));
if (attrs.Contains("substanceunits"))
substanceUnits = (String)attrs["substanceunits"];
if (attrs.Contains("hasonlysubstanceunits"))
hasOnlySubstanceUnits = Boolean.Parse((String)attrs["hasonlysubstanceunits"]);
if (attrs.Contains("boundarycondition"))
boundaryCondition = Boolean.Parse((String)attrs["boundarycondition"]);
if (attrs.Contains("constant"))
constant = Boolean.Parse((String)attrs["constant"]);
if (attrs.Contains("speciestype"))
{
String sTypeId = (String)attrs["speciesType"];
speciesType = (SpeciesType)this.model.findObject(sTypeId);
}
if (attrs.Contains("compartment"))
{
String cId = (String)attrs["compartment"];
compartment = (Compartment)this.model.findObject(cId);
}
if (attrs.Contains("substanceunits"))
{
substanceUnits = (String)attrs["substanceunits"];
}
else
{
// look it up based on units of compartment;
}
species.AddProperties(speciesType, compartment, initialAmount,
initialConcentration, substanceUnits, hasOnlySubstanceUnits, boundaryCondition,
constant);
this.model.listOfSpecies.Add(species);
}
