public void TestMixtureModelOnChr1()
{
string file = Path.Combine(TestPaths.LocalTestDataDirectory, "Chr1.csv");
SparseArray <int> AD = new SparseArray <int>();
SparseArray <int> DP = new SparseArray <int>();
using (StreamReader sr = new StreamReader(new FileStream(file, FileMode.Open)))
{
var counter = 0;
while (counter < 20000)
{
string line = sr.ReadLine();
string[] arr = line.Split(',');
int dp = int.Parse(arr[arr.Length - 1]);
DP.Add(dp);
if (arr.Length == 2)
{
AD.Add(dp - int.Parse(arr[0]));
}
else
{
AD.Add(int.Parse(arr[arr.Length - 2]));
}
counter++;
}
}
MixtureModel model = MixtureModel.FitMixtureModel(AD, DP);
Assert.Equal(0.000656, model.Means[0], 3);
Assert.Equal(0.366, model.Means[1], 3);
Assert.Equal(0.998, model.Means[2], 3);
}
public void IndexOfTest()
{
SparseArray <int> test = new SparseArray <int>();
test.Add(100);
test.Add(200);
Assert.Equal(1, test.IndexOf(200));
Assert.Equal(-1, test.IndexOf(300));
}
public void AddTest()
{
int count = _array.Count;
_array.Add(0);
Assert.Equal(count + 1, _array.Count);
Assert.Equal(0, _array[_array.Count - 1]);
_array.Add(5);
Assert.Equal(count + 2, _array.Count);
Assert.Equal(5, _array[_array.Count - 1]);
}
public void SparseArrayEnumeratorTest()
{
SparseArray <Int32> array = new SparseArray <Int32>(this.values);
IEnumerator enumerator = this.values.GetEnumerator();
IEnumerator <Int32> arrayEnumerator = array.GetEnumerator();
IEnumerator arrayCollectionEnumerator = (array as IEnumerable).GetEnumerator();
while (enumerator.MoveNext())
{
arrayEnumerator.MoveNext().ShouldBeTrue();
arrayCollectionEnumerator.MoveNext().ShouldBeTrue();
arrayEnumerator.Current.ShouldBe(enumerator.Current);
arrayEnumerator.Current.ShouldBe(arrayCollectionEnumerator.Current);
}
arrayEnumerator.Reset();
arrayCollectionEnumerator.Reset();
while (arrayEnumerator.MoveNext())
{
arrayCollectionEnumerator.MoveNext().ShouldBeTrue();
arrayEnumerator.Current.ShouldBe(arrayCollectionEnumerator.Current);
}
// exceptions
array.Add(0);
Should.Throw <InvalidOperationException>(() => arrayEnumerator.MoveNext());
Should.Throw <InvalidOperationException>(() => arrayEnumerator.Reset());
}
public void SparseArrayAddTest()
{
// empty array
SparseArray <Int32> array = new SparseArray <Int32>(0);
for (Int32 index = 0; index < this.values.Length; index++)
{
array.Add(this.values[index]);
}
array.Length.ShouldBe(this.values.Length);
for (Int32 index = 0; index < array.Count; index++)
{
array[index].ShouldBe(this.values[index]);
}
// filled array
array = new SparseArray <Int32>(Enumerable.Repeat(0, 10));
for (Int32 index = 0; index < this.values.Length; index++)
{
array.Add(this.values[index]);
}
array.Length.ShouldBe(this.values.Length + 10);
for (Int32 index = 10; index < array.Count; index++)
{
array[index].ShouldBe(this.values[index - 10]);
}
}
private static void Push(FloatingText txt, int key)
{
txt._key = key;
var stack = Stacks[key];
if (stack == null)
{
stack = new List <FloatingText>();
Stacks.Add(key, stack);
}
if (stack.Count > 0)
{
var below = txt;
var aboveIndex = stack.Count - 1;
while (aboveIndex >= 0)
{
var above = stack[aboveIndex];
if (above.Y + above.Height > below.Y)
{
above.Y = below.Y - above.Height;
below = above;
aboveIndex--;
}
else
{
break;
}
}
}
stack.Add(txt);
}
public void SparseArrayAddTest()
{
// empty array
SparseArray <Int32> array = new SparseArray <Int32>(0);
for (Int32 i = 0; i < _values.Length; i++)
{
array.Add(_values[i]);
}
Assert.AreEqual(_values.Length, array.Length);
for (Int32 i = 0; i < array.Count; i++)
{
Assert.AreEqual(_values[i], array[i]);
}
// filled array
array = new SparseArray <Int32>(Enumerable.Repeat(0, 10));
for (Int32 i = 0; i < _values.Length; i++)
{
array.Add(_values[i]);
}
Assert.AreEqual(_values.Length + 10, array.Length);
for (Int32 i = 10; i < array.Count; i++)
{
Assert.AreEqual(_values[i - 10], array[i]);
}
}
public SparseArrayTests()
{
int[] arr = new int[] { 0, 0, 55, 50, 0, 22, 80, 0, 56, 52, 40, 0, 63 };
_array = new SparseArray <int>();
foreach (int val in arr)
{
_array.Add(val);
}
}
public void OutOfOrderStartingMeansTest()
{
string file = Path.Combine(TestPaths.LocalTestDataDirectory, "Chr1.csv");
SparseArray <int> AD = new SparseArray <int>();
SparseArray <int> DP = new SparseArray <int>();
using (StreamReader sr = new StreamReader(new FileStream(file, FileMode.Open)))
{
int counter = 0;
while (true)
{
string line = sr.ReadLine();
if (line == null || counter > 100000)
{
break;
}
string[] arr = line.Split(',');
int dp = int.Parse(arr[arr.Length - 1]);
DP.Add(dp);
if (arr.Length == 2)
{
AD.Add(dp - int.Parse(arr[0]));
}
else
{
AD.Add(int.Parse(arr[arr.Length - 2]));
}
counter++;
}
}
var model1 = MixtureModel.FitMixtureModel(AD, DP, new double[] { 0.01, 0.45, 0.99 });
var model2 = MixtureModel.FitMixtureModel(AD, DP, new double[] { 0.45, 0.01, 0.99 });
for (int i = 0; i < model1.Means.Length; i++)
{
Assert.Equal(model1.Means[i], model2.Means[i], 4);
Assert.Equal(model1.MixtureWeights[i], model2.MixtureWeights[i], 4);
}
}
public void MalformedDataTest()
{
SparseArray <int> alleleDepth = new SparseArray <int>();
SparseArray <int> totalDepth = new SparseArray <int>();
for (int i = 0; i < 10; i++)
{
alleleDepth.Add(0);
totalDepth.Add(10);
}
Assert.Throws <MixtureModelException>(() => MixtureModel.FitMixtureModel(alleleDepth, totalDepth));
}
public virtual Plant Plant(Plant.Seed seed, int pos)
{
var plant = plants[pos];
if (plant != null)
{
plant.Wither();
}
plant = seed.Couch(pos);
plants.Add(pos, plant);
GameScene.Add(plant);
return(plant);
}
public void SparseArrayEnumeratorTest()
{
SparseArray <Int32> array = new SparseArray <Int32>(_values);
IEnumerator enumerator = _values.GetEnumerator();
IEnumerator <Int32> arrayEnumerator = array.GetEnumerator();
IEnumerator arrayCollectionEnumerator = (array as IEnumerable).GetEnumerator();
while (enumerator.MoveNext())
{
Assert.IsTrue(arrayEnumerator.MoveNext());
Assert.IsTrue(arrayCollectionEnumerator.MoveNext());
Assert.AreEqual(enumerator.Current, arrayEnumerator.Current);
Assert.AreEqual(arrayCollectionEnumerator.Current, arrayEnumerator.Current);
}
arrayEnumerator.Reset();
arrayCollectionEnumerator.Reset();
while (arrayEnumerator.MoveNext())
{
Assert.IsTrue(arrayCollectionEnumerator.MoveNext());
Assert.AreEqual(arrayCollectionEnumerator.Current, arrayEnumerator.Current);
}
// exceptions
array.Add(0);
Assert.Throws <InvalidOperationException>(() => arrayEnumerator.MoveNext());
Assert.Throws <InvalidOperationException>(() => arrayEnumerator.Reset());
arrayEnumerator.Dispose();
Assert.Throws <ObjectDisposedException>(() => arrayEnumerator.MoveNext());
arrayEnumerator.Dispose();
}
public virtual Heap Drop(Item item, int cell)
{
if (Dungeon.IsChallenged(Challenges.NO_FOOD) && item is Food)
{
item = new Gold(item.Price());
}
else if (Dungeon.IsChallenged(Challenges.NO_ARMOR) && item is Armor)
{
item = new Gold(item.Price());
}
else if (Dungeon.IsChallenged(Challenges.NO_HEALING) && item is PotionOfHealing)
{
item = new Gold(item.Price());
}
if ((map[cell] == Terrain.ALCHEMY) && !(item is Plant.Seed))
{
int n;
do
{
n = cell + NEIGHBOURS8[pdsharp.utils.Random.Int(8)];
} while (map[n] != Terrain.EMPTY_SP);
cell = n;
}
var heap = heaps[cell];
if (heap == null)
{
heap = new Heap();
heap.Pos = cell;
if (map[cell] == Terrain.CHASM || (Dungeon.Level != null && pit[cell]))
{
GameScene.Discard(heap);
}
else
{
heaps.Add(cell, heap);
GameScene.Add(heap);
}
}
else
if (heap.HeapType == Heap.Type.LockedChest || heap.HeapType == Heap.Type.CrystalChest)
{
int n;
do
{
n = cell + NEIGHBOURS8[pdsharp.utils.Random.Int(8)];
}while (!passable[n] && !avoid[n]);
return(Drop(item, n));
}
heap.Drop(item);
if (Dungeon.Level != null)
{
Press(cell, null);
}
return(heap);
}
public virtual void RestoreFromBundle(Bundle bundle)
{
mobs = new HashSet <Mob>();
heaps = new SparseArray <Heap>();
Blobs = new Dictionary <Type, Blob>();
plants = new SparseArray <Plant>();
map = bundle.GetIntArray(MAP);
visited = bundle.GetBooleanArray(VISITED);
mapped = bundle.GetBooleanArray(MAPPED);
entrance = bundle.GetInt(ENTRANCE);
exit = bundle.GetInt(EXIT);
weakFloorCreated = false;
AdjustMapSize();
var collection = bundle.GetCollection(HEAPS);
foreach (var h in collection)
{
var heap = (Heap)h;
if (resizingNeeded)
{
heap.Pos = AdjustPos(heap.Pos);
}
heaps.Add(heap.Pos, heap);
}
collection = bundle.GetCollection(PLANTS);
foreach (var p in collection)
{
var plant = (Plant)p;
if (resizingNeeded)
{
plant.Pos = AdjustPos(plant.Pos);
}
plants.Add(plant.Pos, plant);
}
collection = bundle.GetCollection(MOBS);
foreach (var m in collection)
{
var mob = (Mob)m;
if (mob == null)
{
continue;
}
if (resizingNeeded)
{
mob.pos = AdjustPos(mob.pos);
}
mobs.Add(mob);
}
collection = bundle.GetCollection(BLOBS);
foreach (var blob in collection.OfType <Blob>())
{
Blobs.Add(blob.GetType(), blob);
}
BuildFlagMaps();
CleanWalls();
}
private static void Tests1()
{
int keysCount = 1 << 15;
int maxValue = 1 << 16;
uint umaxValue = 1 << 16;
int[] keys = new int[keysCount];
uint[] ukeys = new uint[keysCount];
var r = new Random(42);
for (int i = 0; i < keysCount; i++)
{
keys[i] = r.Next(maxValue);
ukeys[i] = (uint)keys[i];
}
foreach (var warmup in new[] { true, false })
{
for (int li = 0; li < 40; li++)
{
GC.Collect();
GC.WaitForPendingFinalizers();
var dict = new Dictionary <int, int>();
Measure($"Add to Dictionary", warmup, () =>
{
for (int i = 0; i < keysCount; i++)
{
dict[keys[i]] = maxValue - keys[i];
}
return(0);
});
Measure($"Sum in Dictionary", warmup, () =>
{
int checksum = 0;
for (int i = 0; i < keysCount; i++)
{
checksum += dict[keys[i]];
}
return(checksum);
});
Measure($"Rem from Dictionary", warmup, () =>
{
for (int i = 0; i < keysCount; i++)
{
dict.Remove(keys[i]);
}
return(0);
});
var sa = new SparseArray(16, 10);
Measure($"Add to SparseArray", warmup, () =>
{
for (int i = 0; i < keysCount; i++)
{
sa.Add(keys[i], maxValue - keys[i]);
}
return(0);
});
Measure($"Sum in SparseArray", warmup, () =>
{
int checksum = 0;
for (int i = 0; i < keysCount; i++)
{
checksum += sa.Get(keys[i]);
}
return(checksum);
});
//Measure($"Rem from SparseArray", warmup, () =>
//{
// for (int i = 0; i < keysCount; i++)
// dict.Remove(keys[i]);
// return 0;
//});
var um = new UInt32UInt32Map();
Measure($"Add to UInt32UInt32Map", warmup, () =>
{
for (int i = 0; i < keysCount; i++)
{
um.GetRef(ukeys[i]) = (umaxValue - ukeys[i]);
}
return(0);
});
Measure($"Sum in UInt32UInt32Map", warmup, () =>
{
uint checksum = 0;
for (int i = 0; i < keysCount; i++)
{
checksum += um.GetRef(ukeys[i]);
}
return(checksum);
});
var im = new Int32Int32Map();
Measure($"Add to Int32Int32Map", warmup, () =>
{
for (int i = 0; i < keysCount; i++)
{
im.GetRef(keys[i]) = (maxValue - keys[i]);
}
return(0);
});
Measure($"Sum in Int32Int32Map", warmup, () =>
{
int checksum = 0;
for (int i = 0; i < keysCount; i++)
{
checksum += im.GetRef(keys[i]);
}
return(checksum);
});
/*
* var pool = new BufferPool(256).SpecializeFor<int>();
* QuickDictionary<int, int, Buffer<int>, Buffer<int>, Buffer<int>, PrimitiveComparer<int>>
* .Create(pool, pool, pool, 2, 3, out var bdict);
*
* Measure($"Add to BepuDictionary", warmup, () =>
* {
* for (int i = 0; i < keysCount; i++)
* bdict.Add(keys[i], maxValue - keys[i], pool, pool, pool);
* return 0;
* });
*
* Measure($"Sum in BepuDictionary", warmup, () =>
* {
* int checksum = 0;
* for (int i = 0; i < keysCount; i++)
* {
* bdict.TryGetValue(keys[i], out int value);
* checksum += value;
* }
*
* return checksum;
* });
*
* Measure($"Rem from BepuDictionary", warmup, () =>
* {
* for (int i = 0; i < keysCount; i++)
* bdict.FastRemove(keys[i]);
* return 0;
* });
*
* //dictionary.EnsureCapacity(dictionary.Count * 3, pool, pool, pool);
* //dictionary.Compact(pool, pool, pool);
*
* bdict.Dispose(pool, pool, pool);
* pool.Raw.Clear();
*/
}
}
foreach (var result in results_)
{
Console.WriteLine(
$"Benchmarked avg of {result.Value.Count} samples totalling {result.Value.Average():F3} µs to {result.Key}");
}
//TestSetResizing<Buffer<int>, BufferPool<int>>(bufferPool);
//var arrayPool = new ArrayPool<int>();
//TestSetResizing<Array<int>, ArrayPool<int>>(arrayPool);
//arrayPool.Clear();
}
