//
//------------------------------------------------------------------------------
public AllocationStatistics(SequenceDesignContext context, bool fTracingEnabled)
{
this.fTracingEnabled = fTracingEnabled;
AddColumn(12, "iter", "N0", () => context.DesignIter);
AddColumn(9, "best", "", () => context.ScaleScoreFormatted(this.scoring.designScoreBest.Score));
AddColumn(9, "cur", "", () => context.ScaleScoreFormatted(this.scoring.designScoreCur.Score));
AddColumn(13, "mut'ns", "F2", "/iter", () => (double)this.cMutations / this.cScoringIter);
AddColumn(10, "overall", "F1", "/s", () => (this.cPrinted > cPrintedOmit) ? ((double)this.cTotalScoringIter / ((this.now-this.nowScoringTrialZero).TotalMilliseconds * 0.001)) : 0.0);
AddColumn(10, "iters", "F1", "/s", () => (double)this.cScoringIter / ((this.now - this.nowPrev).TotalMilliseconds * 0.001));
AddColumn(10, "legal", "F1", "/s", () => (double)(this.cLegalUp+this.cDown) / ((this.now - this.nowPrev).TotalMilliseconds * 0.001));
AddColumn(8, "temp", "F1", () => this.scoring.temperature);
AddColumn(6, "n", "D", () => this.scoring.designScoreStatistics.N);
// AddColumn(9, "mean", "F2", () => context.ScaleScore(scoring.designScoreDistribution.Mean));
// AddColumn(9, "stddev", "F2", () => context.ScaleScore(scoring.designcoreDistribution.StdDev));
AddColumn(8, "downs", "F1", "%", () => (double)this.cDown / this.cScoringIter * 100);
AddColumn(9, "legalup", "F1", "%", () => (double)this.cLegalUp / this.cScoringIter * 100);
AddColumn(9, "illegal", "F1", "%", () => (double)this.cIllegalUp / this.cScoringIter * 100);
AddColumn(8, "ups", "F1", "%", () => (double)this.cUp / this.cScoringIter * 100);
AddColumn(9, "abandon", "F1", "%", () => (double)this.cAbandon / this.cScoringIter * 100);
AddColumn(9, "hillexp", "g3", () => this.HillExpansion);
AddColumn(8, "cMutd", "F2", () => (double)this.cChangedStrandsSinceScored / this.cScoringAttempts);
AddColumn(5, "cTot", "D", () => this.cScoreable);
AddColumn(10, "remain", "", () =>
{
System.TimeSpan elapsed = this.now - this.nowIterZero;
if (context.DesignIter != 0 && elapsed.TotalMilliseconds > 0)
{
double itersPerSecond = context.DesignIter / (elapsed.TotalMilliseconds * 0.001);
long itersRemaining = context.Program.DesignIterMax - context.DesignIter;
return System.TimeSpan.FromSeconds(itersRemaining / itersPerSecond).ToString("dd':'hh':'mm");
}
else
return "unk";
});
if (fTracingEnabled)
{
this.fileWriter = context.Program.CreateWritableFile("-trace", out this.fileStream);
}
}
void OutputStrands(int resultNumber, SequenceDesignContext context, PrettyPrintContext pp, List<Strand> strands, long iteration)
{
List<string> prints = strands.ConvertAll<string>(s => pp.Cloned().PrettyPrint(BuiltIns.orient(s, Strand.Direction.FiveToThree)));
//
pp.NewLine();
string strStrandsCaption = context.Designer==null
? $"#{resultNumber}: Strands:"
: $"#{resultNumber}: Strands: score={context.ScaleScoreFormatted(context.Scoring.designScoreCur.Score)} iter={iteration:N0}";
string strStrandsUnderline = new string('-', strStrandsCaption.Length);
pp.AppendLine(strStrandsCaption);
pp.AppendLine(strStrandsUnderline);
pp.Indent();
//
AutoWidthTable formatter = new AutoWidthTable();
List<string> formats = new List<string>();
formatter.AddColumn(strands, s => s.DisplayName); formats.Add("{0}");
formatter.AddColumn(strands, s => s.Length); formats.Add(" len={0}");
if (context.Designer !=null)
{
formatter.AddColumn(strands, s => context.ScaleScoreFormatted(s.DesignScore)); formats.Add(" score={0}");
formatter.AddColumn(strands, s => true
? String.Format("{1}{0:F1}", (s.MeltInfo as IMeltInfo).TempCelsiusCur, (s.MeltInfo.hasGoal ? ":" : "="))
: "=n/a");
formats.Add(" Tm{0}");
}
formatter.AddColumn(prints, p => p); formats.Add(" {0}");
// formatter.AddColumn(strands, s => s.ChunckedNucleotidesWithDecorations); formats.Add(" {0}");
formatter.FormatTo(pp, formats.ToArray());
//
if (context.Designer != null)
{
pp.NewLine();
formatter = new AutoWidthTable();
formats = new List<string>();
formatter.AddColumn(strands, s => $"{s.DisplayName}.seed="); formats.Add("{0}");
formatter.AddColumn(strands, s => $"\"{s.ChunckedNucleotidesWithDecorations}\";"); formats.Add("{0}");
formatter.FormatTo(pp, formats.ToArray());
}
//
pp.Outdent();
}