public void GetMinOffset_MissingBin()
{
const ulong expectedResults = 3723191187417;
var linearFileOffsets = new ulong[2196];
linearFileOffsets[2195] = expectedResults;
var idToChunks = new Dictionary <int, Interval[]>
{
[6876] = new[] { new Interval(1, 1) }
};
var refSeq = new ReferenceIndex(ChromosomeUtilities.Chr2, idToChunks, linearFileOffsets);
ulong observedResults = SearchUtilities.GetMinOffset(refSeq, 35979265);
Assert.Equal(expectedResults, observedResults);
}
public void GetMinOffset_MissingFirstBin()
{
const ulong expectedResults = 4351134646660;
var linearFileOffsets = new ulong[5353];
linearFileOffsets[5352] = expectedResults;
var idToChunks = new Dictionary <int, Interval[]>
{
[1254] = new[] { new Interval(1, 1) }
};
var refSeq = new ReferenceIndex(ChromosomeUtilities.Chr2, idToChunks, linearFileOffsets);
ulong observedResults = SearchUtilities.GetMinOffset(refSeq, 87687168);
Assert.Equal(expectedResults, observedResults);
}
public void GetMinOffset_Nominal()
{
const ulong expectedResults = 3591443256775;
var linearFileOffsets = new ulong[1630];
linearFileOffsets[1629] = expectedResults;
var idToChunks = new Dictionary <int, Interval[]>
{
[6310] = new[] { new Interval(1, 1) }
};
var refSeq = new ReferenceIndex(ChromosomeUtilities.Chr2, idToChunks, linearFileOffsets);
ulong observedResults = SearchUtilities.GetMinOffset(refSeq, 26699125);
Assert.Equal(expectedResults, observedResults);
}