public static void WriteSearchEngineParams(string msmName, SilacLabel[] labels, bool addLabels, bool variableMods,
SearchEngineParams msh, string titleSuffix)
{
if (addLabels)
{
for (int i = 0; i < labels.Length; i++)
{
if (variableMods)
{
msh.AddVariabeModification(AminoAcid.GetMascotModificationStringForLabel(labels[i]));
}
else
{
msh.AddFixedModification(AminoAcid.GetMascotModificationStringForLabel(labels[i]));
}
}
}
msh.Title += titleSuffix;
msh.Write(msmName.Substring(0, msmName.Length - 4) + ".par");
}
