/// <summary>
/// Writes the peak matching results to the local peak matching database.
/// </summary>
public void WritePeakMatchResults(PeakMatchingResults <UMCClusterLight, MassTagLight> results,
MassTagDatabase database,
out int matchedMassTags,
out int matchedProteins)
{
var clusterToMassTagMapDaoHibernate = new ClusterToMassTagMapDAOHibernate();
var stacFdrdaoHibernate = new STACDAOHibernate();
var massTagList = new List <MassTagLight>();
var proteinList = new Dictionary <int, Protein>();
var clusterToMassTagMapList = new List <ClusterToMassTagMap>();
clusterToMassTagMapDaoHibernate.ClearAll();
stacFdrdaoHibernate.ClearAll();
foreach (var match in results.Matches)
{
var tag = match.Target;
var feature = match.Observed;
var clusterToMassTagMap = new ClusterToMassTagMap(feature.Id, tag.Id);
clusterToMassTagMap.ConformerId = tag.ConformationId;
if (!clusterToMassTagMapList.Contains(clusterToMassTagMap))
{
clusterToMassTagMapList.Add(clusterToMassTagMap);
clusterToMassTagMap.StacScore = match.Confidence;
clusterToMassTagMap.StacUP = match.Uniqueness;
}
if (!massTagList.Contains(tag))
{
massTagList.Add(tag);
}
var databaseContainsProtein = database.Proteins.ContainsKey(tag.Id);
if (databaseContainsProtein)
{
var proteins = database.Proteins[tag.Id];
foreach (var protein in proteins.Where(protein => !proteinList.ContainsKey(protein.ProteinId)))
{
proteinList.Add(protein.ProteinId, protein);
}
}
}
var uniqueProteins = new List <Protein>();
foreach (var protein in proteinList.Values)
{
uniqueProteins.Add(protein);
}
matchedMassTags = massTagList.Count;
matchedProteins = uniqueProteins.Count;
clusterToMassTagMapDaoHibernate.AddAll(clusterToMassTagMapList);
stacFdrdaoHibernate.AddAll(results.FdrTable);
}
/// <summary>
/// Writes the peak matching results to the local peak matching database.
/// </summary>
public void WritePeakMatchResults(PeakMatchingResults<UMCClusterLight, MassTagLight> results,
MassTagDatabase database,
out int matchedMassTags,
out int matchedProteins)
{
var clusterToMassTagMapDaoHibernate = new ClusterToMassTagMapDAOHibernate();
var stacFdrdaoHibernate = new STACDAOHibernate();
var massTagList = new List<MassTagLight>();
var proteinList = new Dictionary<int, Protein>();
var clusterToMassTagMapList = new List<ClusterToMassTagMap>();
clusterToMassTagMapDaoHibernate.ClearAll();
stacFdrdaoHibernate.ClearAll();
foreach (var match in results.Matches)
{
var tag = match.Target;
var feature = match.Observed;
var clusterToMassTagMap = new ClusterToMassTagMap(feature.Id, tag.Id);
clusterToMassTagMap.ConformerId = tag.ConformationId;
if (!clusterToMassTagMapList.Contains(clusterToMassTagMap))
{
clusterToMassTagMapList.Add(clusterToMassTagMap);
clusterToMassTagMap.StacScore = match.Confidence;
clusterToMassTagMap.StacUP = match.Uniqueness;
}
if (!massTagList.Contains(tag))
{
massTagList.Add(tag);
}
var databaseContainsProtein = database.Proteins.ContainsKey(tag.Id);
if (databaseContainsProtein)
{
var proteins = database.Proteins[tag.Id];
foreach (var protein in proteins.Where(protein => !proteinList.ContainsKey(protein.ProteinId)))
{
proteinList.Add(protein.ProteinId, protein);
}
}
}
var uniqueProteins = new List<Protein>();
foreach (var protein in proteinList.Values)
{
uniqueProteins.Add(protein);
}
matchedMassTags = massTagList.Count;
matchedProteins = uniqueProteins.Count;
clusterToMassTagMapDaoHibernate.AddAll(clusterToMassTagMapList);
stacFdrdaoHibernate.AddAll(results.FdrTable);
}