public Residue(
int begin,
int end,
int grouping,
int partitions,
int partitionValues,
int groupBook,
int[] secondStages,
int[] bookList,
int[] classMetric1,
int[] classMetric2,
ResidueType residueType)
{
Begin = begin;
End = end;
Grouping = grouping;
Partitions = partitions;
PartitionValues = partitionValues;
GroupBook = groupBook;
SecondStages = secondStages.ToFixedLength(64);
BookList = bookList.ToFixedLength(512);
ClassMetric1 = classMetric1.ToFixedLength(64);
ClassMetric2 = classMetric2.ToFixedLength(64);
ResidueType = residueType;
}
public ActionResult DeleteConfirmed(int id)
{
ResidueType residueType = residual.ResidueTypes.Find(id);
residual.ResidueTypes.Remove(residueType);
residual.SaveChanges();
return(RedirectToAction("ListResidues"));
}
public ActionResult EditResidue([Bind(Include = "ID,Name,Unit")] ResidueType residueType)
{
if (ModelState.IsValid)
{
residual.Entry(residueType).State = EntityState.Modified;
residual.SaveChanges();
return(RedirectToAction("ListResidues"));
}
return(View(residueType));
}
public ActionResult CreateResidue([Bind(Include = "ID,Name,Unit")] ResidueType residueType)
{
if (ModelState.IsValid)
{
residual.ResidueTypes.Add(residueType);
residual.SaveChanges();
return(RedirectToAction("ListResidues"));
}
return(View(residueType));
}
public Residue Clone(ResidueType residueTypeOverride, int groupingOverride)
=> new Residue(
Begin,
End,
groupingOverride,
Partitions,
PartitionValues,
GroupBook,
SecondStages,
BookList,
ClassMetric1,
ClassMetric2,
residueTypeOverride);
public ActionResult DeleteResidue(int?id)
{
if (id == null)
{
return(View("Index"));
}
ResidueType residueType = residual.ResidueTypes.Find(id);
if (residueType == null)
{
return(HttpNotFound());
}
return(View(residueType));
}
public ResidueTemplate(
ResidueType residueType,
ResidueLimitType limitType,
int grouping,
ResidueEntry residue,
IStaticCodeBook bookAux,
IStaticCodeBook booxAuxManaged,
IStaticBookBlock booksBase,
IStaticBookBlock booksBaseManaged)
{
ResidueType = residueType;
LimitType = limitType;
Residue = residue;
BookAux = bookAux;
BookAuxManaged = booxAuxManaged;
BooksBase = booksBase;
BooksBaseManaged = booksBaseManaged;
Grouping = grouping;
}
/// <summary>
/// Create an object using the contents of the corresponding MzIdentML object
/// </summary>
/// <param name="r"></param>
/// <param name="idata"></param>
public ResidueObj(ResidueType r, IdentDataObj idata)
: base(idata)
{
Code = r.code;
Mass = r.mass;
}