public static void addRenderInformation(RenderLayoutPlugin rPlugin)
{
if (rPlugin == null)
{
Console.WriteLine("could not add render information!");
Environment.Exit(4);
}
LocalRenderInformation rInfo = rPlugin.createLocalRenderInformation();
rInfo.setId("info");
rInfo.setName("Example Render Information");
rInfo.setProgramName("RenderInformation Examples");
rInfo.setProgramVersion("1.0");
// add some colors
ColorDefinition color = rInfo.createColorDefinition();
color.setId("black");
color.setColorValue("#000000");
color = rInfo.createColorDefinition();
color.setId("silver");
color.setColorValue("#c0c0c0");
color = rInfo.createColorDefinition();
color.setId("white");
color.setColorValue("#FFFFFF");
// add a linear gradient from black to white to silver
LinearGradient gradient = rInfo.createLinearGradientDefinition();
gradient.setId("simpleGradient");
gradient.setPoint1(new RelAbsVector(), new RelAbsVector());
gradient.setPoint2(new RelAbsVector(0, 100), new RelAbsVector(0, 100));
GradientStop stop = gradient.createGradientStop();
stop.setOffset(new RelAbsVector());
stop.setStopColor("white");
stop = gradient.createGradientStop();
stop.setOffset(new RelAbsVector(0, 100));
stop.setStopColor("silver");
// add a species style that represents them as ellipses with the gradient above
Style style = rInfo.createStyle("ellipseStyle");
style.getGroup().setFillColor("simpleGradient");
style.getGroup().setStroke("black");
style.getGroup().setStrokeWidth(2.0);
style.addType("SPECIESGLYPH");
Ellipse ellipse = style.getGroup().createEllipse();
ellipse.setCenter2D(new RelAbsVector(0, 50), new RelAbsVector(0, 50));
ellipse.setRadii(new RelAbsVector(0, 50), new RelAbsVector(0, 50));
}
public static int Main(string[] args)
{
if (args.Length != 2)
{
Console.WriteLine(" Usage: addRenderInformation <input file> <output file> \n" +
" Adds a render information object to the input file");
return(1);
}
string inputFile = args[0];
string outputFile = args[1];
SBMLDocument doc = libsbml.readSBMLFromFile(inputFile);
long numErrors = doc.getNumErrors(libsbml.LIBSBML_SEV_ERROR);
if (numErrors > 0)
{
Console.WriteLine("Encountered errors while reading the file. ");
Console.WriteLine("Please correct the following errors and try again.");
doc.printErrors();
return(2);
}
Model model = doc.getModel();
LayoutModelPlugin plugin = (LayoutModelPlugin)model.getPlugin("layout");
if (plugin == null || plugin.getNumLayouts() == 0)
{
Console.WriteLine("The loaded model contains no layout information, please add these first.");
return(3);
}
RenderListOfLayoutsPlugin lolPlugin = (RenderListOfLayoutsPlugin)plugin.getListOfLayouts().getPlugin("render");
if (lolPlugin != null && lolPlugin.getNumGlobalRenderInformationObjects() > 0)
{
Console.WriteLine("The loaded model contains global Render information. ");
}
// add render information to the first layout
Layout layout = plugin.getLayout(0);
RenderLayoutPlugin rPlugin = (RenderLayoutPlugin)layout.getPlugin("render");
if (rPlugin != null && rPlugin.getNumLocalRenderInformationObjects() > 0)
{
Console.WriteLine("The loaded model contains local Render information. ");
}
else
{
string uri = doc.getLevel() == 2 ? RenderExtension.getXmlnsL2() : RenderExtension.getXmlnsL3V1V1();
// enable render package
doc.enablePackage(uri, "render", true);
doc.setPackageRequired("render", false);
rPlugin = (RenderLayoutPlugin)layout.getPlugin("render");
addRenderInformation(rPlugin);
libsbml.writeSBMLToFile(doc, outputFile);
}
return(0);
}
public static int Main(string[] args)
{
if (args.Length != 1)
{
Console.WriteLine(" Usage: printRenderInformation <input file> \n" +
" prints a summary of the render information object.");
return(1);
}
string inputFile = args[0];
SBMLDocument doc = libsbml.readSBMLFromFile(inputFile);
Console.WriteLine("Using libSBML: {0} supporting packages for:", libsbml.getLibSBMLDottedVersion());
for (int i = 0; i < SBMLExtensionRegistry.getNumRegisteredPackages(); ++i)
{
Console.WriteLine("\t {0}", SBMLExtensionRegistry.getRegisteredPackageName(i));
}
Console.WriteLine("\nThe document is: level {0}, version {1}", doc.getLevel(), doc.getVersion());
for (int i = 0; i < doc.getNumPlugins(); ++i)
{
Console.WriteLine(" doc uses package: {0}", doc.getPlugin(i).getElementNamespace());
}
Console.WriteLine("\n");
long numErrors = doc.getNumErrors(libsbml.LIBSBML_SEV_ERROR);
if (numErrors > 0)
{
Console.WriteLine("Encountered errors while reading the file. ");
Console.WriteLine("Please correct the following errors and try again.");
doc.printErrors();
return(2);
}
Model model = doc.getModel();
LayoutModelPlugin plugin = (LayoutModelPlugin)model.getPlugin("layout");
if (plugin == null || plugin.getNumLayouts() == 0)
{
Console.WriteLine("The loaded model contains no layout information, please add these first.");
return(3);
}
RenderListOfLayoutsPlugin lolPlugin = (RenderListOfLayoutsPlugin)plugin.getListOfLayouts().getPlugin("render");
if (lolPlugin != null && lolPlugin.getNumGlobalRenderInformationObjects() > 0)
{
Console.WriteLine("The loaded model contains global Render information: ");
for (int i = 0; i < lolPlugin.getNumGlobalRenderInformationObjects(); ++i)
{
GlobalRenderInformation info = lolPlugin.getRenderInformation(i);
print_render_info(info);
}
}
Layout layout = plugin.getLayout(0);
RenderLayoutPlugin rPlugin = (RenderLayoutPlugin)layout.getPlugin("render");
if (rPlugin != null && rPlugin.getNumLocalRenderInformationObjects() > 0)
{
Console.WriteLine("The loaded model contains local Render information. ");
// here we would do the same as above for the local render information ...
for (int i = 0; i < rPlugin.getNumLocalRenderInformationObjects(); ++i)
{
LocalRenderInformation info = rPlugin.getRenderInformation(i);
print_render_info(info);
}
}
return(0);
}
