public RegulatoryRegion(IChromosome chromosome, int start, int end, CompactId id, RegulatoryRegionType type)
{
Id = id;
Type = type;
Start = start;
End = end;
Chromosome = chromosome;
}
public void RegulatoryRegion_EndToEnd()
{
IChromosome expectedChromosome = new Chromosome("chrBob", "Bob", 1);
const int expectedStart = int.MaxValue;
const int expectedEnd = int.MinValue;
const string expectedId = "ENST00000540021";
const RegulatoryRegionType expectedType = RegulatoryRegionType.open_chromatin_region;
var indexToChromosome = new Dictionary <ushort, IChromosome>
{
[expectedChromosome.Index] = expectedChromosome
};
// ReSharper disable ConditionIsAlwaysTrueOrFalse
var regulatoryRegion = new RegulatoryRegion(expectedChromosome, expectedStart, expectedEnd,
CompactId.Convert(expectedId), expectedType);
// ReSharper restore ConditionIsAlwaysTrueOrFalse
IRegulatoryRegion observedRegulatoryRegion;
using (var ms = new MemoryStream())
{
using (var writer = new ExtendedBinaryWriter(ms, Encoding.UTF8, true))
{
regulatoryRegion.Write(writer);
}
ms.Position = 0;
using (var reader = new ExtendedBinaryReader(ms))
{
observedRegulatoryRegion = RegulatoryRegion.Read(reader, indexToChromosome);
}
}
Assert.NotNull(observedRegulatoryRegion);
Assert.Equal(expectedStart, observedRegulatoryRegion.Start);
Assert.Equal(expectedEnd, observedRegulatoryRegion.End);
Assert.Equal(expectedId, observedRegulatoryRegion.Id.WithoutVersion);
Assert.Equal(expectedType, observedRegulatoryRegion.Type);
Assert.Equal(expectedChromosome.Index, observedRegulatoryRegion.Chromosome.Index);
}
