public void GetReferencePloidyIntervals_VcfPloidy1AndSameQueryInterval_PloidyIs1()
{
var queryInterval = new ReferenceInterval("chrX", new Interval(1, 2));
var ploidyVcfIntervals = new ReferencePloidyInterval(queryInterval, 1).Yield().ToList();
AssertSingleReferencePloidy(ploidyVcfIntervals, queryInterval, 1);
}
public void GetReferencePloidyIntervals_VcfPloidy1AndPartialOverlapQueryInterval_PloidyIs1And2(bool symbolicAltAllele)
{
var vcfInterval = new ReferenceInterval("chrX", new Interval(1, 1));
var ploidyVcfIntervals = new ReferencePloidyInterval(vcfInterval, 1).Yield().ToList();
var queryInterval = new ReferenceInterval("chrX", new Interval(1, 2));
var expectedPloidyIntervals = new[]
{
CreatePloidyInterval("chrX", new Interval(1, 1), 1),
CreatePloidyInterval("chrX", new Interval(2, 2), 2)
};
AssertEqualPloidy(ploidyVcfIntervals, queryInterval, expectedPloidyIntervals, symbolicAltAllele);
}