protected override void PrepareBeforeProcessing(string directory)
{
if (!Directory.Exists(directory))
{
Directory.CreateDirectory(directory);
}
if (!options.Overwrite && (options.OutputMzXmlFormat || (!options.GroupByMode && !options.GroupByMsLevel)))
{
AbstractRawConverter proc;
if (options.OutputMzXmlFormat)
{
proc = new Raw2MzXMLProcessor(options);
}
else
{
proc = new Raw2MgfProcessor(options);
}
sourceFiles = (from f in sourceFiles
let ret = proc.GetResultFile(RawFileFactory.GetRawFileReaderWithoutOpen(f), f)
where !File.Exists(ret)
select f).ToList();
}
}