private void btnReset_Click(object sender, EventArgs e)
{
if (ccb_Added.Items.Count != 0)
{
mz_id_to_process.Clear();
ccb_Added.Items.Clear();
R_matrix.refresh();
update_figure(threshold);
}
}
public void update_ccbox()
{
ccb_Added.Items.Clear();
int st_inc = 0;
int st_exc = 0;
if (mz_id_to_process.Sum() > 0 && mz_id_to_process.Sum() < R_matrix.mz_array.Length)
{
for (int i = 1; i < mz_id_to_process.Length; i++)
{
if (mz_id_to_process[i] != mz_id_to_process[i - 1])
{
if (mz_id_to_process[i - 1] == 0)
{
CCBoxItem item = new CCBoxItem(R_matrix.mz_array[st_exc], R_matrix.mz_array[i - 1], false);
ccb_Added.Items.Add(item);
st_inc = i;
}
else
{
CCBoxItem item = new CCBoxItem(R_matrix.mz_array[st_inc], R_matrix.mz_array[i - 1], true);
ccb_Added.Items.Add(item);
st_exc = i;
}
}
}
if (mz_id_to_process[mz_id_to_process.Length - 1] == 0)
{
CCBoxItem item = new CCBoxItem(R_matrix.mz_array[st_exc], R_matrix.mz_array[mz_id_to_process.Length - 1], false);
ccb_Added.Items.Add(item);
}
else
{
CCBoxItem item = new CCBoxItem(R_matrix.mz_array[st_inc], R_matrix.mz_array[mz_id_to_process.Length - 1], true);
ccb_Added.Items.Add(item);
}
}
else
{
R_matrix.refresh();
}
}
public void read_r_matrix(string fileName)
{
try
{
//var mzxml = new LIMPFileReader.LimpXml(fileName, (float)0, true);
Cursor = Cursors.WaitCursor;
var reader = new MatReader(fileName);
var structure = reader["data"];
var cType = structure["spectra"].ValueType;
var fields = structure.Fields;
//var scans = (reader["result"]["scans"].GetValue<int[,]>()).ToDouble();
var scans = reader["data"]["spectra"].GetValue <double[, ]>().Transpose();
R_matrix.mz_array = reader["data"]["mz"].GetValue <double[, ]>().ToJagged()[0];
mzmin = R_matrix.mz_array[0];
mzmax = R_matrix.mz_array[R_matrix.mz_array.Length - 1];
n_precision = (int)(Math.Round(1.0 / (R_matrix.mz_array[1] - R_matrix.mz_array[0])));
rf = new double[scans.Columns(), scans.Columns()];
R_matrix.matrix = rf;
rf2 = new double[rf.Columns(), rf.Rows()];
R_matrix.scans = scans.Transpose();
int mzlength = scans.GetLength(0);
var scannames = reader["data"]["filenames"];
var scan_of_file = (reader["data"]["scan_of_file"].GetValue <double[, ]>()).ToInt32();
scannames_count = scan_of_file.Length;
sampleNameList.Clear();
sampleNameList.Add(scannames[scan_of_file[0, 0]].Value.ToString());
sampleCoordList.Clear();
sampleCoordList.Add(0.0);
scanNamesList.Clear();
int intercept = 0;
for (int i = 0; i < scannames_count; i++)
{
scanNamesList.Add(scannames[scan_of_file[0, i]].Value.ToString());
if (i > 0)
{
if (scannames[scan_of_file[0, i]].Value.ToString() != scannames[scan_of_file[0, i - 1]].Value.ToString())
{
sampleNameList.Add(scannames[scan_of_file[0, i]].Value.ToString());
sampleCoordList.Add(i);
intercept = i;
}
}
sampleScanList.Add(Convert.ToString(i + 1 - intercept));
}
R_matrix.scan_names = sampleScanList;
R_matrix.file_names = sampleNameList;
R_matrix.refresh();
update_figure(threshold);
Cursor = Cursors.Arrow;
}
catch (Exception e)
{
var msg = e.Message;
Cursor = Cursors.Arrow;
MessageBox.Show(msg, "Warning", MessageBoxButtons.OK, MessageBoxIcon.Information, MessageBoxDefaultButton.Button1, MessageBoxOptions.DefaultDesktopOnly);
return;
}
}