Ejemplo n.º 1
0
        public void test_RDFAnnotation2_modelWithHistoryAndCVTerms()
        {
            ModelHistory h = new ModelHistory();
            ModelCreator c = new ModelCreator();

            c.setFamilyName("Keating");
            c.setGivenName("Sarah");
            h.addCreator(c);
            Date d = new Date(2008, 11, 17, 18, 37, 0, 0, 0, 0);

            h.setCreatedDate(d);
            h.setModifiedDate(d);
            m2.unsetModelHistory();
            m2.setModelHistory(h);
            CVTerm cv = new CVTerm();

            cv.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
            cv.setBiologicalQualifierType(libsbml.BQB_IS_VERSION_OF);
            cv.addResource("http://www.geneontology.org/#GO:0005892");
            m2.addCVTerm(cv);
            XMLNode ann      = RDFAnnotationParser.parseModelHistory(m2);
            string  expected = "<annotation>\n" +
                               "  <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
                               "    <rdf:Description rdf:about=\"#_000001\">\n" +
                               "      <dc:creator rdf:parseType=\"Resource\">\n" +
                               "        <rdf:Bag>\n" +
                               "          <rdf:li rdf:parseType=\"Resource\">\n" +
                               "            <vCard:N rdf:parseType=\"Resource\">\n" +
                               "              <vCard:Family>Keating</vCard:Family>\n" +
                               "              <vCard:Given>Sarah</vCard:Given>\n" +
                               "            </vCard:N>\n" +
                               "          </rdf:li>\n" +
                               "        </rdf:Bag>\n" +
                               "      </dc:creator>\n" +
                               "      <dcterms:created rdf:parseType=\"Resource\">\n" +
                               "        <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
                               "      </dcterms:created>\n" +
                               "      <dcterms:modified rdf:parseType=\"Resource\">\n" +
                               "        <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
                               "      </dcterms:modified>\n" +
                               "      <bqbiol:isVersionOf>\n" +
                               "        <rdf:Bag>\n" +
                               "          <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0005892\"/>\n" +
                               "        </rdf:Bag>\n" +
                               "      </bqbiol:isVersionOf>\n" +
                               "    </rdf:Description>\n" +
                               "  </rdf:RDF>\n" +
                               "</annotation>";

            if (ann != null)
            {
                ;
            }
            {
                assertEquals(true, equals(expected, ann.toXMLString()));
            }
            {
            }
        }
        public void test_L3ModelHistory_delete_Model()
        {
            XMLNode node     = RDFAnnotationParser.parseModelHistory(m);
            XMLNode n1       = RDFAnnotationParser.deleteRDFAnnotation(node);
            string  expected = "<annotation/>";

            assertTrue(n1.getNumChildren() == 0);
            assertTrue(n1.getName() == "annotation");
            assertEquals(true, equals(expected, n1.toXMLString()));
            node = null;
        }
Ejemplo n.º 3
0
        public void test_RDFAnnotation2_modelWithHistoryAndMultipleModifiedDates()
        {
            ModelHistory h = new ModelHistory();
            ModelCreator c = new ModelCreator();

            c.setFamilyName("Keating");
            c.setGivenName("Sarah");
            h.addCreator(c);
            Date d = new Date(2005, 2, 2, 14, 56, 11);

            h.setCreatedDate(d);
            h.addModifiedDate(d);
            h.addModifiedDate(d);
            m2.unsetModelHistory();
            m2.setModelHistory(h);
            XMLNode ann      = RDFAnnotationParser.parseModelHistory(m2);
            string  expected = "<annotation>\n" +
                               "  <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
                               "    <rdf:Description rdf:about=\"#_000001\">\n" +
                               "      <dc:creator rdf:parseType=\"Resource\">\n" +
                               "        <rdf:Bag>\n" +
                               "          <rdf:li rdf:parseType=\"Resource\">\n" +
                               "            <vCard:N rdf:parseType=\"Resource\">\n" +
                               "              <vCard:Family>Keating</vCard:Family>\n" +
                               "              <vCard:Given>Sarah</vCard:Given>\n" +
                               "            </vCard:N>\n" +
                               "          </rdf:li>\n" +
                               "        </rdf:Bag>\n" +
                               "      </dc:creator>\n" +
                               "      <dcterms:created rdf:parseType=\"Resource\">\n" +
                               "        <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
                               "      </dcterms:created>\n" +
                               "      <dcterms:modified rdf:parseType=\"Resource\">\n" +
                               "        <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
                               "      </dcterms:modified>\n" +
                               "      <dcterms:modified rdf:parseType=\"Resource\">\n" +
                               "        <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
                               "      </dcterms:modified>\n" +
                               "    </rdf:Description>\n" +
                               "  </rdf:RDF>\n" +
                               "</annotation>";

            assertEquals(true, equals(expected, ann.toXMLString()));
        }
        public void test_L3ModelHistory_parseModelHistory_Model()
        {
            XMLNode node = RDFAnnotationParser.parseModelHistory(m);

            assertTrue(node.getNumChildren() == 1);
            XMLNode rdf = node.getChild(0);

            assertTrue(("RDF" == rdf.getName()));
            assertTrue(("rdf" == rdf.getPrefix()));
            assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI()));
            assertTrue(rdf.getNumChildren() == 1);
            XMLNode desc = rdf.getChild(0);

            assertTrue(("Description" == desc.getName()));
            assertTrue(("rdf" == desc.getPrefix()));
            assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI()));
            assertTrue(desc.getNumChildren() == 4);
            XMLNode creator = desc.getChild(0);

            assertTrue(("creator" == creator.getName()));
            assertTrue(("dcterms" == creator.getPrefix()));
            assertTrue(creator.getNumChildren() == 1);
            XMLNode Bag = creator.getChild(0);

            assertTrue(("Bag" == Bag.getName()));
            assertTrue(("rdf" == Bag.getPrefix()));
            assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI()));
            assertTrue(Bag.getNumChildren() == 1);
            XMLNode li = Bag.getChild(0);

            assertTrue(("li" == li.getName()));
            assertTrue(("rdf" == li.getPrefix()));
            assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI()));
            assertTrue(li.getNumChildren() == 3);
            XMLNode N = li.getChild(0);

            assertTrue(("N" == N.getName()));
            assertTrue(("vCard" == N.getPrefix()));
            assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI()));
            assertTrue(N.getNumChildren() == 2);
            XMLNode Family = N.getChild(0);

            assertTrue(("Family" == Family.getName()));
            assertTrue(("vCard" == Family.getPrefix()));
            assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI()));
            assertTrue(Family.getNumChildren() == 1);
            XMLNode Given = N.getChild(1);

            assertTrue(("Given" == Given.getName()));
            assertTrue(("vCard" == Given.getPrefix()));
            assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI()));
            assertTrue(Given.getNumChildren() == 1);
            XMLNode EMAIL = li.getChild(1);

            assertTrue(("EMAIL" == EMAIL.getName()));
            assertTrue(("vCard" == EMAIL.getPrefix()));
            assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI()));
            assertTrue(EMAIL.getNumChildren() == 1);
            XMLNode ORG = li.getChild(2);

            assertTrue(("ORG" == ORG.getName()));
            assertTrue(("vCard" == ORG.getPrefix()));
            assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI()));
            assertTrue(ORG.getNumChildren() == 1);
            XMLNode Orgname = ORG.getChild(0);

            assertTrue(("Orgname" == Orgname.getName()));
            assertTrue(("vCard" == Orgname.getPrefix()));
            assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI()));
            assertTrue(Orgname.getNumChildren() == 1);
            XMLNode created = desc.getChild(1);

            assertTrue(("created" == created.getName()));
            assertTrue(("dcterms" == created.getPrefix()));
            assertTrue(("http://purl.org/dc/terms/" == created.getURI()));
            assertTrue(created.getNumChildren() == 1);
            XMLNode cr_date = created.getChild(0);

            assertTrue(("W3CDTF" == cr_date.getName()));
            assertTrue(("dcterms" == cr_date.getPrefix()));
            assertTrue(("http://purl.org/dc/terms/" == cr_date.getURI()));
            assertTrue(cr_date.getNumChildren() == 1);
            XMLNode modified = desc.getChild(2);

            assertTrue(("modified" == modified.getName()));
            assertTrue(("dcterms" == modified.getPrefix()));
            assertTrue(("http://purl.org/dc/terms/" == modified.getURI()));
            assertTrue(modified.getNumChildren() == 1);
            XMLNode mo_date = created.getChild(0);

            assertTrue(("W3CDTF" == mo_date.getName()));
            assertTrue(("dcterms" == mo_date.getPrefix()));
            assertTrue(("http://purl.org/dc/terms/" == mo_date.getURI()));
            assertTrue(mo_date.getNumChildren() == 1);
            node = null;
        }