public void test_RDFAnnotation2_modelWithHistoryAndCVTerms()
{
ModelHistory h = new ModelHistory();
ModelCreator c = new ModelCreator();
c.setFamilyName("Keating");
c.setGivenName("Sarah");
h.addCreator(c);
Date d = new Date(2008, 11, 17, 18, 37, 0, 0, 0, 0);
h.setCreatedDate(d);
h.setModifiedDate(d);
m2.unsetModelHistory();
m2.setModelHistory(h);
CVTerm cv = new CVTerm();
cv.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
cv.setBiologicalQualifierType(libsbml.BQB_IS_VERSION_OF);
cv.addResource("http://www.geneontology.org/#GO:0005892");
m2.addCVTerm(cv);
XMLNode ann = RDFAnnotationParser.parseModelHistory(m2);
string expected = "<annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
" <rdf:Description rdf:about=\"#_000001\">\n" +
" <dc:creator rdf:parseType=\"Resource\">\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:parseType=\"Resource\">\n" +
" <vCard:N rdf:parseType=\"Resource\">\n" +
" <vCard:Family>Keating</vCard:Family>\n" +
" <vCard:Given>Sarah</vCard:Given>\n" +
" </vCard:N>\n" +
" </rdf:li>\n" +
" </rdf:Bag>\n" +
" </dc:creator>\n" +
" <dcterms:created rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
" </dcterms:created>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" <bqbiol:isVersionOf>\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0005892\"/>\n" +
" </rdf:Bag>\n" +
" </bqbiol:isVersionOf>\n" +
" </rdf:Description>\n" +
" </rdf:RDF>\n" +
"</annotation>";
if (ann != null)
{
;
}
{
assertEquals(true, equals(expected, ann.toXMLString()));
}
{
}
}
public void test_L3ModelHistory_delete_Model()
{
XMLNode node = RDFAnnotationParser.parseModelHistory(m);
XMLNode n1 = RDFAnnotationParser.deleteRDFAnnotation(node);
string expected = "<annotation/>";
assertTrue(n1.getNumChildren() == 0);
assertTrue(n1.getName() == "annotation");
assertEquals(true, equals(expected, n1.toXMLString()));
node = null;
}
public void test_RDFAnnotation2_modelWithHistoryAndMultipleModifiedDates()
{
ModelHistory h = new ModelHistory();
ModelCreator c = new ModelCreator();
c.setFamilyName("Keating");
c.setGivenName("Sarah");
h.addCreator(c);
Date d = new Date(2005, 2, 2, 14, 56, 11);
h.setCreatedDate(d);
h.addModifiedDate(d);
h.addModifiedDate(d);
m2.unsetModelHistory();
m2.setModelHistory(h);
XMLNode ann = RDFAnnotationParser.parseModelHistory(m2);
string expected = "<annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
" <rdf:Description rdf:about=\"#_000001\">\n" +
" <dc:creator rdf:parseType=\"Resource\">\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:parseType=\"Resource\">\n" +
" <vCard:N rdf:parseType=\"Resource\">\n" +
" <vCard:Family>Keating</vCard:Family>\n" +
" <vCard:Given>Sarah</vCard:Given>\n" +
" </vCard:N>\n" +
" </rdf:li>\n" +
" </rdf:Bag>\n" +
" </dc:creator>\n" +
" <dcterms:created rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
" </dcterms:created>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" </rdf:Description>\n" +
" </rdf:RDF>\n" +
"</annotation>";
assertEquals(true, equals(expected, ann.toXMLString()));
}
public void test_L3ModelHistory_parseModelHistory_Model()
{
XMLNode node = RDFAnnotationParser.parseModelHistory(m);
assertTrue(node.getNumChildren() == 1);
XMLNode rdf = node.getChild(0);
assertTrue(("RDF" == rdf.getName()));
assertTrue(("rdf" == rdf.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI()));
assertTrue(rdf.getNumChildren() == 1);
XMLNode desc = rdf.getChild(0);
assertTrue(("Description" == desc.getName()));
assertTrue(("rdf" == desc.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI()));
assertTrue(desc.getNumChildren() == 4);
XMLNode creator = desc.getChild(0);
assertTrue(("creator" == creator.getName()));
assertTrue(("dcterms" == creator.getPrefix()));
assertTrue(creator.getNumChildren() == 1);
XMLNode Bag = creator.getChild(0);
assertTrue(("Bag" == Bag.getName()));
assertTrue(("rdf" == Bag.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI()));
assertTrue(Bag.getNumChildren() == 1);
XMLNode li = Bag.getChild(0);
assertTrue(("li" == li.getName()));
assertTrue(("rdf" == li.getPrefix()));
assertTrue(("http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI()));
assertTrue(li.getNumChildren() == 3);
XMLNode N = li.getChild(0);
assertTrue(("N" == N.getName()));
assertTrue(("vCard" == N.getPrefix()));
assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI()));
assertTrue(N.getNumChildren() == 2);
XMLNode Family = N.getChild(0);
assertTrue(("Family" == Family.getName()));
assertTrue(("vCard" == Family.getPrefix()));
assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI()));
assertTrue(Family.getNumChildren() == 1);
XMLNode Given = N.getChild(1);
assertTrue(("Given" == Given.getName()));
assertTrue(("vCard" == Given.getPrefix()));
assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI()));
assertTrue(Given.getNumChildren() == 1);
XMLNode EMAIL = li.getChild(1);
assertTrue(("EMAIL" == EMAIL.getName()));
assertTrue(("vCard" == EMAIL.getPrefix()));
assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI()));
assertTrue(EMAIL.getNumChildren() == 1);
XMLNode ORG = li.getChild(2);
assertTrue(("ORG" == ORG.getName()));
assertTrue(("vCard" == ORG.getPrefix()));
assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI()));
assertTrue(ORG.getNumChildren() == 1);
XMLNode Orgname = ORG.getChild(0);
assertTrue(("Orgname" == Orgname.getName()));
assertTrue(("vCard" == Orgname.getPrefix()));
assertTrue(("http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI()));
assertTrue(Orgname.getNumChildren() == 1);
XMLNode created = desc.getChild(1);
assertTrue(("created" == created.getName()));
assertTrue(("dcterms" == created.getPrefix()));
assertTrue(("http://purl.org/dc/terms/" == created.getURI()));
assertTrue(created.getNumChildren() == 1);
XMLNode cr_date = created.getChild(0);
assertTrue(("W3CDTF" == cr_date.getName()));
assertTrue(("dcterms" == cr_date.getPrefix()));
assertTrue(("http://purl.org/dc/terms/" == cr_date.getURI()));
assertTrue(cr_date.getNumChildren() == 1);
XMLNode modified = desc.getChild(2);
assertTrue(("modified" == modified.getName()));
assertTrue(("dcterms" == modified.getPrefix()));
assertTrue(("http://purl.org/dc/terms/" == modified.getURI()));
assertTrue(modified.getNumChildren() == 1);
XMLNode mo_date = created.getChild(0);
assertTrue(("W3CDTF" == mo_date.getName()));
assertTrue(("dcterms" == mo_date.getPrefix()));
assertTrue(("http://purl.org/dc/terms/" == mo_date.getURI()));
assertTrue(mo_date.getNumChildren() == 1);
node = null;
}