/// <summary>
/// Validate Rgroup decomposition & build proper query table
/// </summary>
/// <param name="qt"></param>
/// <param name="q"></param>
/// <param name="resultKeys"></param>
public override void DoPreSearchTransformation(
Query originalQuery,
QueryTable originalQt,
Query newQuery)
{
int ri;
QueryTable qt = originalQt.Clone(); // make copy we can modify
SetupQueryTableForRGroupDecomposition(qt, newQuery);
newQuery.AddQueryTableUnique(qt); // store replacement query table
return;
}
/// <summary>
/// Create clone query and metatables that can be modified later if necessary
/// </summary>
QueryTable CloneQueryTableAndMetaTable(QueryTable qt)
{
QueryTable qt2 = qt.Clone();
MetaTable mt2 = qt.MetaTable.Clone();
qt2.MetaTable = mt2;
foreach (QueryColumn qc2 in qt2.QueryColumns)
{
MetaColumn mc = qc2.MetaColumn;
MetaColumn mc2 = mt2.GetMetaColumnByName(mc.Name); // get clone metacolumn
qc2.MetaColumn = mc2;
}
return(qt2);
}
/// <summary>
/// Convert a multipivot table into a set of tables where data exists for
/// one or more of the compound identifiers in the list.
/// </summary>
/// <param name="qt">Current form of query table</param>
/// <param name="q">Query to add transformed tables to</param>
/// <param name="ResultKeys">Keys data will be retrieved for</param>
public override void ExpandToMultipleTables(
QueryTable qt,
Query q,
List <string> resultKeys)
{
MetaTable mt2;
QueryTable qt2;
QueryColumn qc2;
HashSet <string> geneDict = new HashSet <string>();
string sql;
string geneSymbol;
int t0 = TimeOfDay.Milliseconds();
// Build query & get set of gene symbols
Query q2 = new Query();
q2.SingleStepExecution = true;
q2.KeyCriteria = q2.KeyCriteriaDisplay = // keylist to return (may want to include all target summary option criteria)
" in (" + MqlUtil.FormatValueListString(resultKeys, true) + ")";
qt2 = qt.Clone();
qt2.SelectKeyOnly();
qc2 = qt2.GetQueryColumnByNameWithException("gene_symbol");
qc2.Selected = true;
q2.AddQueryTable(qt2);
QueryEngine qe2 = new QueryEngine();
qe2.ExecuteQuery(q2);
while (true)
{
object[] vo = qe2.NextRow();
if (vo == null)
{
qe2.Close();
break;
}
if (qe2.Cancelled)
{
qe2.Close();
return;
}
geneSymbol = vo[2] as string;
if (Lex.IsNullOrEmpty(geneSymbol))
{
continue;
}
geneDict.Add(geneSymbol.ToUpper());
}
string[] sa = new string[geneDict.Count];
geneDict.CopyTo(sa);
Array.Sort(sa);
foreach (string s0 in sa)
{
geneSymbol = s0;
string mt2Name = MultiDbAssayDataNames.BasePivotTablePrefix + geneSymbol;
//if (QueryEngine.FilterAllDataQueriesByDatabaseContents &&
// !MetaTableCollection.IsMetaTableInContents(mtName)) continue; // metatable must be in contents
mt2 = MetaTableCollection.Get(mt2Name);
if (mt2 == null)
{
continue; // in case can't allocate for some reason
}
qt2 = q.GetQueryTableByName(mt2.Name); // see if already in query
if (qt2 != null)
{
continue; // ignore if already there
}
qt2 = new QueryTable(q, mt2); // allocate new query table & add to query
qt2.DeselectAll();
foreach (QueryColumn qc0 in qt.QueryColumns) // set selected columns to match those in the source qt
{
if (qc0.Selected && qt2.GetQueryColumnByName(qc0.MetaColumn.Name) != null)
{
qt2.GetQueryColumnByName(qc0.MetaColumn.Name).Selected = true;
}
}
if (qt.HeaderBackgroundColor != Color.Empty)
{
qt2.HeaderBackgroundColor = qt.HeaderBackgroundColor;
}
}
t0 = TimeOfDay.Milliseconds() - t0;
return;
}
