// Using a DependencyProperty as the backing store for MassMzImage. This enables animation, styling, binding, etc...
private void CreatePlots()
{
if (AlignmentData == null || AlignmentData.AlignmentData == null)
{
return;
}
var alignmentData = AlignmentData.AlignmentData;
var heatmap = HeatmapFactory.CreateAlignedHeatmap(alignmentData.HeatScores, alignmentData.BaselineIsAmtDB);
var feature = ScatterPlotFactory.CreateFeatureMassScatterPlot(AlignmentData.AligneeFeatures);
var netHistogram = HistogramFactory.CreateHistogram(alignmentData.NetErrorHistogram, "NET Error", "NET Error");
var massHistogram = HistogramFactory.CreateHistogram(alignmentData.NetErrorHistogram, "Mass Error", "Mass Error (ppm)");
var residuals = alignmentData.ResidualData;
var netResidual = ScatterPlotFactory.CreateResidualPlot(residuals.Net, residuals.LinearCustomNet,
residuals.LinearNet, "NET Residuals", "Scans", "NET");
var massMzResidual = ScatterPlotFactory.CreateResidualPlot(residuals.Mz, residuals.MzMassError,
residuals.MzMassErrorCorrected, "Mass Residuals", "m/z", "Mass Errors");
var massScanResidual = ScatterPlotFactory.CreateResidualPlot(residuals.Net, residuals.MzMassError,
residuals.MzMassErrorCorrected, "Mass Residuals", "Scan", "Mass Errors");
NetScanImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(netResidual));
MassHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(massHistogram));
NetHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(netHistogram));
HeatmapImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(heatmap));
MassMzImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(massMzResidual));
MassScanImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(massScanResidual));
FeaturePlotImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(feature));
}
private void CreateMassTagPlots()
{
var data = MassTagsData;
PlotName = string.Format("Mass Tag Database");
var plot = ScatterPlotFactory.CreateFeatureMassScatterPlot(data.MassTags);
plot.Model.Title = PlotName;
FeaturesImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plot));
}
private void SetClusters()
{
//var datasetHistogram = HistogramFactory.CreateHistogram(Clusters.CreateClusterDatasetMemeberSizeHistogram(), "Dataset Members");
//var sizeHistogram = HistogramFactory.CreateHistogram(Clusters.CreateClusterSizeHistogram(), "Cluster Members");
var clustersHistogram = ScatterPlotFactory.CreateClusterMassScatterPlot(Clusters);
// ClustersDatasetSizeHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(datasetHistogram));
// ClusterSizeHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(sizeHistogram));
ClustersImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(clustersHistogram));
}
public AlignmentViewModel(AlignmentData alignment)
{
this.WindowTitle = string.Format("{0} Alignment Data", alignment.AligneeDataset);
var plots = new AlignmentPlotCreator(alignment);
this.HeatmapImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plots.Heatmap));
this.NetScanImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plots.NetResidual));
this.MassHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plots.MassHistogram));
this.NetHistogram = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plots.NetHistogram));
this.MassMzImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plots.MassMzResidual));
this.MassScanImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plots.MassScanResidual));
}
///
private void CreatePlots()
{
var data = BaselineData;
var name = "";
if (data.DatasetInformation == null)
{
if (data.Database != null)
{
name = data.Database.Name;
}
}
else
{
name = data.DatasetInformation.DatasetName;
}
PlotName = string.Format("Baseline: {0}", name);
var plot = ScatterPlotFactory.CreateFeatureMassScatterPlot(data.Features);
FeaturesImage = ImageConverter.ConvertImage(PlotImageUtility.CreateImage(plot));
}