public void TestNetworkFromMatrix()
{
if (!PluginInterop.Python.Utils.TryFindPythonExecutable(out string _))
{
Assert.Inconclusive("Python not installed");
}
Assert.Inconclusive("Cannot be tested without dependency on PerseusLibS");
var codeString = Properties.Resources.matrix_to_network;
var codeFile = Path.GetTempFileName();
File.WriteAllText(codeFile, Encoding.UTF8.GetString(codeString));
var processing = new PluginInterop.Python.NetworkFromMatrix();
var mdata = PerseusFactory.CreateMatrixData(new [, ] {
{ 0.0, 1.0 }
}, new List <string> {
"col 1", "col 2"
});
var errString = string.Empty;
var parameters = processing.GetParameters(mdata, ref errString);
Assert.IsTrue(string.IsNullOrEmpty(errString));
parameters.GetParam <string>("Script file").Value = codeFile;
var ndata = PerseusFactoryAnnColumns.CreateNetworkData();
IData[] suppData = null;
var pinfo = new ProcessInfo(new Settings(), s => { }, i => { }, 1);
processing.ProcessData(mdata, ndata, parameters, ref suppData, pinfo);
Assert.IsTrue(string.IsNullOrEmpty(pinfo.ErrString), pinfo.ErrString);
}
/// <summary>
/// Read supplementary files according to file paths and data types.
/// </summary>
public static IData[] ReadSupplementaryData(string[] suppFiles, DataType[] supplDataTypes, ProcessInfo processInfo)
{
var numSupplTables = suppFiles.Length;
IData[] supplData = new IData[numSupplTables];
for (int i = 0; i < numSupplTables; i++)
{
switch (supplDataTypes[i])
{
case DataType.Matrix:
var mdata = PerseusFactory.CreateMatrixData();
PerseusUtils.ReadMatrixFromFile(mdata, processInfo, suppFiles[i], '\t');
supplData[i] = mdata;
break;
case DataType.Network:
var ndata = PerseusFactoryAnnColumns.CreateNetworkData();
FolderFormat.Read(ndata, suppFiles[i], processInfo);
supplData[i] = ndata;
break;
default:
throw new NotImplementedException($"Data type {supplDataTypes[i]} not supported!");
}
}
return(supplData);
}
