private async Task CustomConditionMapAsync(Patient patientFromRepo, PatientExpandedDto mappedPatient)
{
int[] terms = _patientConditionRepository.List(pc => pc.Patient.Id == mappedPatient.Id && pc.TerminologyMedDra != null && !pc.Archived && !pc.Patient.Archived, null, new string[] { "Condition" })
.Select(p => p.TerminologyMedDra.Id)
.ToArray();
var conditionMeddras = await _conditionMeddraRepository.ListAsync(cm => terms.Contains(cm.TerminologyMedDra.Id), null, new string[] { "Condition", "TerminologyMedDra" });
List <PatientConditionGroupDto> groupArray = new List <PatientConditionGroupDto>();
foreach (var conditionMeddra in conditionMeddras)
{
var tempCondition = conditionMeddra.GetConditionForPatient(patientFromRepo);
if (tempCondition != null)
{
var group = new PatientConditionGroupDto()
{
ConditionGroup = conditionMeddra.Condition.Description,
Status = tempCondition.OutcomeDate != null ? "Case Closed" : "Case Open",
PatientConditionId = tempCondition.Id,
StartDate = tempCondition.OnsetDate.ToString("yyyy-MM-dd"),
Detail = String.Format("{0} started on {1}", tempCondition.TerminologyMedDra.DisplayName, tempCondition.OnsetDate.ToString("yyyy-MM-dd"))
};
groupArray.Add(group);
}
}
mappedPatient.ConditionGroups = groupArray;
}
private async Task CustomMapAsync(Encounter encounterFromRepo, EncounterExpandedDto mappedEncounter)
{
if (encounterFromRepo == null)
{
throw new ArgumentNullException(nameof(encounterFromRepo));
}
mappedEncounter.Patient = _mapper.Map <PatientDetailDto>(encounterFromRepo.Patient);
var datasetInstanceFromRepo = await _datasetInstanceRepository.GetAsync(di => di.Dataset.ContextType.Id == (int)ContextTypes.Encounter &&
di.ContextId == mappedEncounter.Id &&
di.EncounterTypeWorkPlan.EncounterType.Id == encounterFromRepo.EncounterType.Id
, new string[] { "Dataset.ContextType"
, "EncounterTypeWorkPlan.EncounterType"
, "Dataset.DatasetCategories.DatasetCategoryElements.DatasetCategory"
, "Dataset.DatasetCategories.DatasetCategoryElements.DatasetCategory"
, "Dataset.DatasetCategories.DatasetCategoryElements.DatasetElement.Field.FieldType"
, "Dataset.DatasetCategories.DatasetCategoryElements.DatasetElement.Field.FieldValues"
, "Dataset.DatasetCategories.DatasetCategoryElements.DatasetElement.DatasetElementSubs"
, "Dataset.DatasetCategories.DatasetCategoryElements.DatasetCategoryElementConditions"
, "DatasetInstanceValues" });
if (datasetInstanceFromRepo != null)
{
var groupedDatasetCategories = datasetInstanceFromRepo.Dataset.DatasetCategories
.SelectMany(dc => dc.DatasetCategoryElements).OrderBy(dc => dc.FieldOrder)
.GroupBy(dce => dce.DatasetCategory)
.ToList();
mappedEncounter.DatasetCategories = groupedDatasetCategories
.Select(dsc => new DatasetCategoryViewDto
{
DatasetCategoryId = dsc.Key.Id,
DatasetCategoryName = dsc.Key.DatasetCategoryName,
DatasetCategoryDisplayed = ShouldCategoryBeDisplayed(encounterFromRepo, dsc.Key),
DatasetElements = dsc.Select(element => new DatasetElementViewDto
{
DatasetElementId = element.DatasetElement.Id,
DatasetElementName = element.DatasetElement.ElementName,
DatasetElementDisplayName = element.FriendlyName ?? element.DatasetElement.ElementName,
DatasetElementHelp = element.Help,
DatasetElementDisplayed = ShouldElementBeDisplayed(encounterFromRepo, element),
DatasetElementChronic = IsElementChronic(encounterFromRepo, element),
DatasetElementSystem = element.DatasetElement.System,
DatasetElementType = element.DatasetElement.Field.FieldType.Description,
DatasetElementValue = datasetInstanceFromRepo.GetInstanceValue(element.DatasetElement.ElementName),
StringMaxLength = element.DatasetElement.Field.MaxLength,
NumericMinValue = element.DatasetElement.Field.MinSize,
NumericMaxValue = element.DatasetElement.Field.MaxSize,
Required = element.DatasetElement.Field.Mandatory,
SelectionDataItems = element.DatasetElement.Field.FieldValues.Select(fv => new SelectionDataItemDto()
{
SelectionKey = fv.Value, Value = fv.Value
}).ToList(),
DatasetElementSubs = element.DatasetElement.DatasetElementSubs.Select(elementSub => new DatasetElementSubViewDto
{
DatasetElementSubId = elementSub.Id,
DatasetElementSubName = elementSub.ElementName,
DatasetElementSubType = elementSub.Field.FieldType.Description
}).ToArray()
})
.ToArray()
})
.ToArray();
}
// Condition groups
int[] terms = _patientConditionRepository.List(pc => pc.Patient.Id == encounterFromRepo.Patient.Id && !pc.Archived && !pc.Patient.Archived, null, new string[] { "TerminologyMedDra" })
.Select(p => p.TerminologyMedDra.Id)
.ToArray();
List <PatientConditionGroupDto> groupArray = new List <PatientConditionGroupDto>();
foreach (var conditionMeddra in _conditionMeddraRepository.List(cm => terms.Contains(cm.TerminologyMedDra.Id), null, new string[] { "Condition" })
.ToList())
{
var tempCondition = conditionMeddra.GetConditionForPatient(encounterFromRepo.Patient);
if (tempCondition != null)
{
var group = new PatientConditionGroupDto()
{
ConditionGroup = conditionMeddra.Condition.Description,
Status = tempCondition.OutcomeDate != null ? "Case Closed" : "Case Open",
PatientConditionId = tempCondition.Id,
StartDate = tempCondition.OnsetDate.ToString("yyyy-MM-dd"),
Detail = $"{tempCondition.TerminologyMedDra.DisplayName} started on {tempCondition.OnsetDate.ToString("yyyy-MM-dd")}"
};
groupArray.Add(group);
}
}
mappedEncounter.ConditionGroups = groupArray;
// Weight history
mappedEncounter.WeightSeries = _patientService.GetElementValues(encounterFromRepo.Patient.Id, "Weight (kg)", 5);
// patient custom mapping
IExtendable patientExtended = encounterFromRepo.Patient;
var attribute = patientExtended.GetAttributeValue("Medical Record Number");
mappedEncounter.Patient.MedicalRecordNumber = attribute != null?attribute.ToString() : "";
}
