public override void GlobalContext()
{
base.GlobalContext();
_compoundProcessRepo = IoC.Resolve <ICompoundProcessRepository>();
_interactionTask = IoC.Resolve <IInteractionTask>();
var cloner = IoC.Resolve <ICloneManager>();
var enzymeFactory = IoC.Resolve <IIndividualEnzymeFactory>();
var transporterFactory = IoC.Resolve <IIndividualTransporterFactory>();
var inhibitor = DomainFactoryForSpecs.CreateStandardCompound().WithName("Inhibitor");
var protocol2 = DomainFactoryForSpecs.CreateStandardIVBolusProtocol().WithName("IV2");
var allPartialProcesses = PartialProcesses.ToList();
foreach (var metaTemplate in allPartialProcesses)
{
var moleculeName = "Molecule_" + metaTemplate.Name;
if (metaTemplate as EnzymaticProcess != null)
{
var individualProtein = enzymeFactory.CreateFor(_individual).WithName(moleculeName);
_individual.AddMolecule(individualProtein.DowncastTo <IndividualEnzyme>().WithName(moleculeName));
}
else
{
var individualProtein = transporterFactory.CreateFor(_individual).WithName(moleculeName);
_individual.AddMolecule(individualProtein.DowncastTo <IndividualTransporter>().WithName(moleculeName));
}
var process = cloner.Clone(metaTemplate).DowncastTo <PartialProcess>();
process.Name = "Process " + moleculeName;
process.MoleculeName = moleculeName;
_compound.AddProcess(process);
var inhibitionTemplate = _compoundProcessRepo.ProcessByName <InteractionProcess>(InhibitionProcessName);
var inhibitionProcess = cloner.Clone(inhibitionTemplate);
inhibitionProcess.Name = "InhibitionProcess " + moleculeName;
inhibitionProcess.MoleculeName = moleculeName;
inhibitor.AddProcess(inhibitionProcess);
}
_simulation = DomainFactoryForSpecs.CreateModelLessSimulationWith(
_individual, new[] { _compound, inhibitor }, new[] { _protocol, protocol2 }).DowncastTo <IndividualSimulation>();
foreach (var inhibitionProcess in inhibitor.AllProcesses <InteractionProcess>())
{
var interactionSelection = new InteractionSelection {
CompoundName = inhibitor.Name, MoleculeName = inhibitionProcess.MoleculeName, ProcessName = inhibitionProcess.Name
};
_simulation.InteractionProperties.AddInteraction(interactionSelection);
}
DomainFactoryForSpecs.AddModelToSimulation(_simulation);
}
protected void ValidateInteractionContainersTest()
{
_interactionTask.AllInteractionContainers(_simulation).Count().ShouldBeEqualTo(PartialProcesses.Count());
}
