partial void setBlankControlTouchUpInside(Foundation.NSObject sender)
{
UKeyboardClick();
if (somethingWentWrong != true)
{
OESApplication.iOS.handleSpectra handleSpec = new OESApplication.iOS.handleSpectra();
float[] refGreen, refBlue, refRed, samGreen, samBlue, samRed;
refGreen = handleSpec.getAvgSpectrasRows(RefGreenPixels, overalHeight, overalWeight, "refGreen");
refBlue = handleSpec.getAvgSpectrasRows(RefBluePixels, overalHeight, overalWeight, "refBlue");
refRed = handleSpec.getAvgSpectrasRows(RefRedPixels, overalHeight, overalWeight, "refRed");
//Console.WriteLine(".........now avg of samples: .........");
samGreen = handleSpec.getAvgSpectrasRows(SamplegreenPixels, overalHeight, overalWeight, "samGreen");
samBlue = handleSpec.getAvgSpectrasRows(SamplebluePixels, overalHeight, overalWeight, "samBlue");
samRed = handleSpec.getAvgSpectrasRows(SampleredPixels, overalHeight, overalWeight, "samRed");
(int peakBlueLocationRef, float maxBlueValRef) = handleSpec.findPeak(refBlue, overalHeight);
(int peakRedLocationRef, float maxRedValRef) = handleSpec.findPeak(refRed, overalHeight);
(int peakGreenLocationRef, float maxGreenValRef) = handleSpec.findPeak(refGreen, overalHeight);
Console.WriteLine("maxRedValRef: " + maxRedValRef + "--- peakRedLocationRef: " + peakRedLocationRef);
Console.WriteLine("maxGreenValRef: " + maxGreenValRef + "--- peakGreenLocationRef: " + peakGreenLocationRef);
Console.WriteLine("maxBlueValRef: " + maxBlueValRef + "--- peakBlueLocationRef: " + peakBlueLocationRef);
if (peakBlueLocationRef > peakGreenLocationRef && peakGreenLocationRef > peakRedLocationRef)
{
//handleSpec.normalizeArray(maxRedValRef, ref refRed);
//handleSpec.normalizeArray(maxGreenValRef, ref refGreen);
//handleSpec.normalizeArray(maxBlueValRef, ref refBlue);
handleSpec.normalizeArray(maxRedValRef, ref samRed);
handleSpec.normalizeArray(maxBlueValRef, ref samBlue);
handleSpec.normalizeArray(maxGreenValRef, ref samGreen);
double[] wavelengthArray = handleSpec.CreateWavelenghtToPixelLocationsUsingReferenceSpectra(peakBlueLocationRef, peakRedLocationRef, overalHeight);
/*
* For saving pixel values into a file use streamWriter with path file:
*/
string path = Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments);
string filename = Path.Combine(path, "blank_" + DateTime.UtcNow.ToLongDateString() + "_Abs.csv");
try
{
if (File.Exists(filename))
{
File.Delete(filename);
}
using (var streamWriter = new StreamWriter(filename, true))
{
int index = 0;
//int startWl = 405;
if (Int32.TryParse(wavelenght.Text, out int wave))
{
Console.WriteLine(wave);
//startWl = wave;
}
else
{
Console.WriteLine("String could not be parsed.");
}
for (int wl = 405; wl < 670; wl += 1)
{
double sampleIntensityRatio = 0.0;
double absorbance = 0.0;
if (wave <= 500)
{
sampleIntensityRatio = handleSpec.calculateIntensity(samBlue, wavelengthArray, "blue", 10, wl);
absorbance = handleSpec.measureAbsorbance(sampleIntensityRatio);
}
else if (wave <= 600)
{
sampleIntensityRatio = handleSpec.calculateIntensity(samGreen, wavelengthArray, "green", 10, wl);
absorbance = handleSpec.measureAbsorbance(sampleIntensityRatio);
}
else
{
sampleIntensityRatio = handleSpec.calculateIntensity(samRed, wavelengthArray, "red", 10, wl);
absorbance = handleSpec.measureAbsorbance(sampleIntensityRatio);
}
//double concentratio = handleSpec.measureConcentration(absorbance, -0.14917, -7.8279);
blankAbsorbances[index] = absorbance;
streamWriter.WriteLine(wl + "," + absorbance);
index++;
}
}
}
catch (Exception e)
{
Console.WriteLine("The process failed: {0}", e.ToString());
}
string Output = "Blank Control Saved. Thank you!";
resultOutput.LineBreakMode = UILineBreakMode.WordWrap;
resultOutput.Lines = 6;
//resultOutputBox.Text = Output;
resultOutput.Text = Output;
}
else
{
string Output = ("Couldn't detect Blue and Red peaks correctly,\n Please take a new picture with brighter spectrums");
resultOutput.LineBreakMode = UILineBreakMode.WordWrap;
resultOutput.Lines = 2;
//resultOutputBox.Text = Output;
resultOutput.Text = Output;
}
}
else
{
string Output = ("Something went wrong with calculating RGB pixel values,\n Please take a new picture");
resultOutput.LineBreakMode = UILineBreakMode.WordWrap;
resultOutput.Lines = 2;
//resultOutputBox.Text = Output;
resultOutput.Text = Output;
}
}
partial void measurePHTouchUpInside(Foundation.NSObject sender)
{
UKeyboardClick();
checkBlankVals();
if (somethingWentWrong != true)
{
OESApplication.iOS.handleSpectra handleSpec = new OESApplication.iOS.handleSpectra();
float[] refGreen, refBlue, refRed, samGreen, samBlue, samRed;
refGreen = handleSpec.getAvgSpectrasRows(RefGreenPixels, overalHeight, overalWeight, "refGreen");
refBlue = handleSpec.getAvgSpectrasRows(RefBluePixels, overalHeight, overalWeight, "refBlue");
refRed = handleSpec.getAvgSpectrasRows(RefRedPixels, overalHeight, overalWeight, "refRed");
//Console.WriteLine(".........now avg of samples: .........");
samGreen = handleSpec.getAvgSpectrasRows(SamplegreenPixels, overalHeight, overalWeight, "samGreen");
samBlue = handleSpec.getAvgSpectrasRows(SamplebluePixels, overalHeight, overalWeight, "samBlue");
samRed = handleSpec.getAvgSpectrasRows(SampleredPixels, overalHeight, overalWeight, "samRed");
(int peakBlueLocationRef, float maxBlueValRef) = handleSpec.findPeak(refBlue, overalHeight);
(int peakRedLocationRef, float maxRedValRef) = handleSpec.findPeak(refRed, overalHeight);
(int peakGreenLocationRef, float maxGreenValRef) = handleSpec.findPeak(refGreen, overalHeight);
Console.WriteLine("maxRedValRef: " + maxRedValRef + "--- peakRedLocationRef: " + peakRedLocationRef);
Console.WriteLine("maxGreenValRef: " + maxGreenValRef + "--- peakGreenLocationRef: " + peakGreenLocationRef);
Console.WriteLine("maxBlueValRef: " + maxBlueValRef + "--- peakBlueLocationRef: " + peakBlueLocationRef);
if (peakBlueLocationRef > peakGreenLocationRef && peakGreenLocationRef > peakRedLocationRef)
{
//handleSpec.normalizeArray(maxRedValRef, ref refRed);
//handleSpec.normalizeArray(maxGreenValRef, ref refGreen);
//handleSpec.normalizeArray(maxBlueValRef, ref refBlue);
handleSpec.normalizeArray(maxRedValRef, ref samRed);
handleSpec.normalizeArray(maxBlueValRef, ref samBlue);
handleSpec.normalizeArray(maxGreenValRef, ref samGreen);
//redPeakLocation: 610.65, bluePeakLocation: 449.1
double[] wavelengthArray = handleSpec.CreateWavelenghtToPixelLocationsUsingReferenceSpectra(peakBlueLocationRef, peakRedLocationRef, overalHeight);
if (Int32.TryParse(wavelenght.Text, out int wave))
{
Console.WriteLine(wave);
}
else
{
Console.WriteLine("String could not be parsed.");
}
string Output = "";
/*
* For saving pixel values into a file use streamWriter with path file:
*/
//this is the existing bundled image path
string folder = Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments);
//this is the destination image file name
string filename = Path.Combine(folder, "EOS_" + year + "_" + month + "_" + day + "_" + hour + "_" + min + "_" + sec + "_" + timeInSeconds + "_wavelength" + wave + ".csv");
//string filename = Path.Combine(path, DateTime.UtcNow.ToLongDateString() + DateTime.UtcNow.ToLongTimeString() + "_Abs.csv");
using (var streamWriter = new StreamWriter(filename, true))
{
streamWriter.WriteLine("wavelength,Absorbance,IntensitysRatio");
int indexi = 0;
for (int wl = 405; wl <= 670; wl += 1)
{
double sampleIntensityRatio = 0.0;
double absorbance = 0.0;
if (wave <= 500)
{
sampleIntensityRatio = handleSpec.calculateIntensity(samBlue, wavelengthArray, "blue", 10, wl);
absorbance = handleSpec.measureAbsorbance(sampleIntensityRatio);
}
else if (wave <= 600)
{
sampleIntensityRatio = handleSpec.calculateIntensity(samGreen, wavelengthArray, "green", 10, wl);
absorbance = handleSpec.measureAbsorbance(sampleIntensityRatio);
}
else
{
sampleIntensityRatio = handleSpec.calculateIntensity(samRed, wavelengthArray, "red", 10, wl);
absorbance = handleSpec.measureAbsorbance(sampleIntensityRatio);
}
absorbance -= blankAbsorbances[indexi];
indexi++;
//double concentratio = handleSpec.measureConcentration(absorbance, -0.14917, -7.8279);
streamWriter.WriteLine(wl + "," + absorbance + "," + sampleIntensityRatio);
if (wl == wave)
{
//double refGreenIntensity = handleSpec.calculateIntensity(refGreen, wavelengthArray, "green", 10, wl);
Output += "Absorbance is " + Math.Round(absorbance, 3) + "\n";
//if(refGreenIntensity < 150)
//{
// Output += "Low Reference Intensity detected,\n which might affect the results.\n It is recommended to take a new Image.";
//}
}
}
}
resultOutput.LineBreakMode = UILineBreakMode.WordWrap;
resultOutput.Lines = 6;
resultOutput.Text = Output;
}
else
{
string Output = ("Couldn't detect Blue and Red peaks correctly,\n Please take a new picture with brighter spectrums");
resultOutput.LineBreakMode = UILineBreakMode.WordWrap;
resultOutput.Lines = 2;
resultOutput.Text = Output;
}
}
else
{
string Output = ("Something went wrong with calculating RGB pixel values,\n Please take a new picture");
resultOutput.LineBreakMode = UILineBreakMode.WordWrap;
resultOutput.Lines = 2;
resultOutput.Text = Output;
}
}
