//http://rosalind.info/problems/mend/
public InferringGenotypeFromAPedigree()
{
var tree = new NewickTree(File.ReadAllLines(@"C:\code\dataset.txt")[0]);
for (int i = tree.Nodes.Count - 1; i > 0; i--)
{
TrieNode node = tree.Nodes[i];
TrieNode parent = tree.Nodes[node.ParentValue];
if (string.IsNullOrEmpty(parent.Name))
{
parent.Name = node.Name;
}
else
{
parent.Name = Combined(parent.Name, node.Name);
}
}
List <double> stuff = tree.Nodes[0].Name.Split(' ').Select(s => Convert.ToDouble(s)).ToList();
double aa = stuff[2];
double Aa = stuff[1];
double AA = stuff[0];
double count = aa + Aa + AA;
Console.Write(AA / count + " " + Aa / count + " " + aa / count);
}
//http://rosalind.info/problems/ctbl/
public CreatingACharacterTable()
{
var tree = new NewickTree(File.ReadAllLines(@"C:\code\dataset.txt")[0]);
var lexList = new List <string>(tree.Nodes.Where(n => n.HasName).Select(n => n.Name));
lexList.Sort();
CharacterTable.WriteCharacterTable(tree.Nodes, lexList);
}
