private void TestReadMzML(FileSystemInfo mzMLFile, int expectedSpectra)
{
var methodName = MethodBase.GetCurrentMethod().Name;
Utils.ShowStarting(methodName, mzMLFile.Name);
var timer = new Stopwatch();
timer.Start();
var reader = new MzMLReader(mzMLFile.FullName);
var constTime = timer.Elapsed;
Console.WriteLine(@"Constructor time: " + constTime);
var numSpectra = reader.NumSpectra;
var metaTime = timer.Elapsed - constTime;
Console.WriteLine(@"Metadata read time: " + metaTime);
var spectra = reader.ReadAllSpectra();
var spectraCount = spectra.Count();
timer.Stop();
reader.Close();
Console.WriteLine(@"Spectra Read time: " + (timer.Elapsed - metaTime));
Console.WriteLine(@"Time: " + timer.Elapsed);
Assert.AreEqual(expectedSpectra, numSpectra, "NumSpectra");
Assert.AreEqual(expectedSpectra, spectraCount, "SpectraCount");
}
[TestCase(@"\\proto-2\UnitTest_Files\InformedProteomics_TestFiles\MZML\VA139IMSMS_compressed.mzML", 3145)] // Centroid, Agilent QTOF, compressed binary data
public void TestReadMzML(string filePath, int expectedSpectra)
{
var methodName = MethodBase.GetCurrentMethod().Name;
TestUtils.ShowStarting(methodName, filePath);
Stopwatch timer = new Stopwatch();
timer.Start();
var reader = new MzMLReader(filePath);
var constTime = timer.Elapsed;
Console.WriteLine(@"Constructor time: " + constTime);
var numSpectra = reader.NumSpectra;
var metaTime = timer.Elapsed - constTime;
Console.WriteLine(@"Metadata read time: " + metaTime);
var spectra = reader.ReadAllSpectra();
var spectraCount = spectra.Count();
timer.Stop();
Console.WriteLine(@"Spectra Read time: " + (timer.Elapsed - metaTime));
Console.WriteLine(@"Time: " + timer.Elapsed);
Assert.AreEqual(expectedSpectra, numSpectra, "NumSpectra");
Assert.AreEqual(expectedSpectra, spectraCount, "SpectraCount");
Assert.AreEqual(numSpectra, spectraCount, "NumSpectra vs. SpectraCount");
reader.Close();
}