public static List <LcMsFeature> LoadProMexResult(int dataId, string featureFilePath, LcMsRun run, double minMass = 2000, double maxMass = 50000)
{
var featureList = new List <LcMsFeature>();
var totalDatasetRunTime = run.GetElutionTime(run.MaxLcScan);
foreach (var entry in Ms1FtEntry.ReadFromFile(featureFilePath, false))
{
if (entry.MonoMass < minMass || maxMass < entry.MonoMass)
{
continue;
}
var feature = entry.ToLcMsFeature(totalDatasetRunTime);
feature.DataSetId = dataId;
featureList.Add(feature);
}
return(featureList);
}
private void Read(string ms1FtFileName)
{
var featureCountFiltered = 0;
var totalFeatureCount = 0;
foreach (var entry in Ms1FtEntry.ReadFromFile(ms1FtFileName))
{
totalFeatureCount++;
if (entry.LikelihoodRatio < _minLikelihoodRatio)
{
continue;
}
featureCountFiltered++;
_lcMsChargeMap.SetMatches(entry.FeatureId, entry.MonoMass, entry.MinScan, entry.MaxScan, entry.RepresentativeScan, entry.MinCharge, entry.MaxCharge);
Ms1FtIndexToScanRange.Add(entry.FeatureId, new Tuple <int, int>(entry.MinScan, entry.MaxScan));
}
// NOTE: The DMS Analysis Manager looks for this statistic; do not change it
Console.Write(@"{0}/{1} features loaded...", featureCountFiltered, totalFeatureCount);
_lcMsChargeMap.CreateMassToScanNumMap();
}
