public void Traiter(TextWriter output)
{
output.WriteLine("- Connexion à TFS : ");
TfsManager tfs = new TfsManager(TfsUrl);
output.WriteLine("- Récupération des fichiers Specflow depuis TFS : ");
string pathToFeatures = Path.Combine(Path.GetTempPath(), "SpecflowTfs_features_" + DateTime.Now.ToString("yyyyMMddhhmmss"));
Directory.CreateDirectory(pathToFeatures);
tfs.DownloadFiles(TfsFolder, "feature", pathToFeatures);
string pathToTestRunConfig = Path.Combine(Path.GetTempPath(), "SpecflowTfs_testRunConfig_" + DateTime.Now.ToString("yyyyMMddhhmmss"));
Directory.CreateDirectory(pathToTestRunConfig);
tfs.DownloadFiles(TfsFolder, "testrunconfig", pathToTestRunConfig);
string pathToTestProject = Path.Combine(Path.GetTempPath(), "SpecflowTfs_testProject_" + DateTime.Now.ToString("yyyyMMddhhmmss"));
Directory.CreateDirectory(pathToTestProject);
tfs.DownloadFiles(TfsFolder, "testrunconfig", pathToTestProject);
MainBL.Analyser(NomProjet,
VersionProjet,
pathToFeatures,
string.Empty,
string.Empty,
output);
}
//Analyze Background Worker start. use Backgroun Worker to keep UI active while analizing.
private void analyzeBackgroundWorker_DoWork(object sender, DoWorkEventArgs e)
{
hadError = false;
_mutationList = new List <Mutation>();
int i = 1;
foreach (string[] s in _mutationsDetailsList)
{
string chrom = s[(int)XlsMinPlace.Chrom];
int position = Convert.ToInt32(s[(int)XlsMinPlace.Position]);
string geneName = s[(int)XlsMinPlace.GeneName];
char refNuc = s[(int)XlsMinPlace.Ref][0];
char varNuc = s[(int)XlsMinPlace.Var][0];
try
{
Mutation tempMutation = MainBL.getMutationByDetails(chrom, position, refNuc, varNuc);
if (tempMutation == null)
{
tempMutation = new Mutation(chrom, position, geneName, refNuc, varNuc);
}
tempMutation.NumOfShows = Convert.ToInt16(s[(int)XlsMinPlace.NumOfShows]);
_mutationList.Add(tempMutation);
_analyzeBackgroundWorker.ReportProgress(i);
i++;
}
catch (Exception)
{
hadError = true;
GeneralMethods.showErrorMessageBox("Something Went Wrong, Please try Again");
break;
}
}
}
public void NumOfPatientWithSameMutationTest()
{
int result = MainBL.getNumOfPatientWithSameMutation("0");
int expected = 0;
Assert.AreEqual(expected, result);
}
//When save clicked, gets all patient details from textBoxs and save patient to database.
private void _savePatientButton_Click(object sender, EventArgs e)
{
string testName = _testNameTextBox.Text;
string id = _idTextBox.Text;
string fName = _firstNameTextBox.Text;
string lName = _lastNameTextBox.Text;
string pathoNum = _pathologicalNoTextBox.Text;
string runNum = _runNoTextBox.Text;
string tumourSite = _tumourSiteTextBox.Text;
string diseaseLevel = _diseaseLevelTextBox.Text;
string prevTreatment = _previousTreatmentTextBox.Text;
string currTreatment = _currentTreatmentTextBox.Text;
string background = _backgroundTextBox.Text;
string conclusion = _conclusionsTextBox1.Text;
//validate textboxs text
if (!(id.Equals("") || fName.Equals("") || lName.Equals("") || pathoNum.Equals("") || runNum.Equals("") || tumourSite.Equals("")))
{
//check if patient with same test name allready exist.
Patient p = new Patient(testName, id, fName, lName, pathoNum, runNum, tumourSite, diseaseLevel, background, prevTreatment, currTreatment, conclusion);
try
{
//If Exist, show message for overwriting.
if (MainBL.patientExistByTestName(testNmae))
{
if (MessageBox.Show("TEST NAME allready exist, Overwrite?", "Notice", MessageBoxButtons.YesNo) == DialogResult.Yes)
{
MainBL.updatePatient(testName, id, fName, lName, pathoNum, runNum, tumourSite, diseaseLevel, background, prevTreatment, currTreatment, conclusion);
_mainForm.CurrPatient = p;
_mutationList = MainBL.getMutationListByTestName(p.TestName);
_mainForm.MutationList = _mutationList;
MessageBox.Show("Patient saved successfully");
}
}
//If not Exist, insert new patient to database.
else
{
MainBL.addPatient(testName, id, fName, lName, pathoNum, runNum, tumourSite, diseaseLevel, prevTreatment, currTreatment, background, conclusion);
_mainForm.CurrPatient = p;
_mainForm.MutationList = _mutationList;
foreach (Mutation m in _mutationList)
{
MainBL.addMatch(testName, m.MutId);
}
MessageBox.Show("Patient saved successfully");
}
}
catch (Exception)
{
GeneralMethods.showErrorMessageBox("Something Went Wrong, Please try Again");
}
}
else
{
ToolTip errorToolTip = new ToolTip();
errorToolTip.SetToolTip(_savePatientButton, "digit only");
errorToolTip.Show("Please Fill All Details", _savePatientButton, 800);
}
colorTextBoxs();
}
public void FalsePatientExistTest()
{
bool result = MainBL.patientExistByTestName("000");
bool expected = false;
Assert.AreEqual(expected, result);
}
public void GetCosmicDetailsTest()
{
List <string> sl = MainBL.getCosmicDetails("3", 178952085, 'A', 'G');
bool result = (sl != null);
bool expected = true;
Assert.AreEqual(expected, result);
}
public void FalseGetCosmicDetailsTest()
{
List <string> sl = MainBL.getCosmicDetails("25", 0, 'A', 'A');
bool result = (sl == null);
bool expected = true;
Assert.AreEqual(expected, result);
}
public void GetGeneThatNotExistTest()
{
Gene g = MainBL.getGene("TestGeneName", "TestChrom");
bool result = (g == null);
bool expected = true;
Assert.AreEqual(expected, result);
}
public void AddGeneTest()
{
MainBL.addGene("PIK3CA", "chr3");
Gene g = MainBL.getGene("PIK3CA", "chr3");
bool result = (g != null);
bool expected = true;
Assert.AreEqual(expected, result);
}
//Get mutation list of patient by test name, and sets the list to the MutationUserControl in MainForm
public void loadMutationDetails(Patient p)
{
try
{
_mutationList = MainBL.getMutationListByTestName(_patient.TestName);
_mainForm.MutationList = _mutationList;
initPatientUC(_mutationList, _patient.TestName);
_mainForm.MutationUC.initTable(_mutationList);
_mainForm.ArticlesUC.initArticleUC(_mutationList);
}
catch (Exception)
{
GeneralMethods.showErrorMessageBox("Something Went Wrong, Please try Again");
}
}
//Initialize the table with the details from the mutation list.
public void initTable(List <Mutation> mutationList)
{
_mutationList = mutationList;
if (_mutationList != null)
{
foreach (Mutation m in _mutationList)
{
DataGridViewRow tempRow = new DataGridViewRow();
tempRow.CreateCells(mutationDataGridView);
tempRow.Cells[0].Value = m.Chrom;
tempRow.Cells[1].Value = m.Position;
tempRow.Cells[2].Value = m.GeneName;
tempRow.Cells[3].Value = m.Ref;
tempRow.Cells[4].Value = m.Var;
tempRow.Cells[5].Value = m.Strand;
tempRow.Cells[6].Value = m.RefCodon;
tempRow.Cells[7].Value = m.VarCodon;
tempRow.Cells[8].Value = m.RefAA;
tempRow.Cells[9].Value = m.VarAA;
tempRow.Cells[10].Value = m.PMutationName;
tempRow.Cells[11].Value = m.CMutationName;
tempRow.Cells[12].Value = m.CosmicName;
tempRow.Cells[13].Value = m.NumOfShows;
try
{
int historyNum = MainBL.getNumOfPatientWithSameMutation(m.MutId);
if (historyNum == 0)
{
tempRow.Cells[14] = new DataGridViewTextBoxCell();
}
tempRow.Cells[14].Value = historyNum;
if (!m.CosmicName.Equals("-----"))
{
tempRow.DefaultCellStyle.BackColor = System.Drawing.ColorTranslator.FromHtml("#ABCDEF");
}
mutationDataGridView.Rows.Add(tempRow);
mutationDataGridView.PerformLayout();
}
catch (Exception)
{
GeneralMethods.showErrorMessageBox("Something Went Wrong, Please try Again");
}
}
}
}
//occurs when cell clicked in dataGridView, use only in history field,Open the history form for current mutation.
private void dataGridView1_CellClick(object sender, DataGridViewCellEventArgs e)
{
if (e.ColumnIndex == 14)
{
string mutationId = _mutationList.ElementAt(e.RowIndex).MutId;
try
{
List <Patient> patientList = MainBL.getPatientListWithMutation(mutationId);
HistoryForm hf = new HistoryForm(patientList, _mainForm);
_mainForm.Enabled = false;
hf.Show();
}
catch (Exception)
{
GeneralMethods.showErrorMessageBox("Something Went Wrong, Please try Again");
}
}
}
//When search clicked, get the id from the idTextBox, search if patient with that id exist.
//If exist creates a new SerchResultForm and show the results, If not, Shows appropriate message
private void _searchPatientButton_Click(object sender, EventArgs e)
{
string patientId = idToLoadTextBox.Text;
try
{
List <Patient> patientList = MainBL.getPatientListById(patientId);
if (patientList != null)
{
_mainForm.Enabled = false;
SearchResultForm srf = new SearchResultForm(patientList, _mainForm);
srf.Show();
}
else
{
GeneralMethods.showErrorMessageBox("Wrong ID, No patient found.");
}
}
catch (Exception)
{
GeneralMethods.showErrorMessageBox("Something Went Wrong, Please try Again");
}
}
//static void Main(string[] args)
//{
// string url = "http://localhost:8089";
// using (WebApp.Start(url))
// {
// Console.WriteLine("Server running on {0}", url);
// Console.WriteLine("-- Press <Enter> to quit --");
// Console.ReadLine();
// }
//}
static void Main(string[] args)
{
if (!args.Any())
{
ShowHelp();
return;
}
string argProjectName = args.FirstOrDefault(a => a.StartsWith("-projectName="));
string argProjectVersion = args.FirstOrDefault(a => a.StartsWith("-projectVersion="));
string argProjectFolder = args.FirstOrDefault(a => a.StartsWith("-projectFolder="));
string argMsTestDll = args.FirstOrDefault(a => a.StartsWith("-testDll="));
string argMsTestSetting = args.FirstOrDefault(a => a.StartsWith("-testSetting="));
if (string.IsNullOrEmpty(argProjectName) ||
string.IsNullOrEmpty(argProjectVersion) ||
string.IsNullOrEmpty(argProjectFolder) ||
string.IsNullOrEmpty(argMsTestDll))
{
ShowHelp();
return;
}
string nomProjet = argProjectName.Split('=').Last();
string versionProjet = argProjectVersion.Split('=').Last();
string folderProjet = argProjectFolder.Split('=').Last();
string dllTestFile = argMsTestDll.Split('=').Last();
string testSetting = string.IsNullOrEmpty(argMsTestSetting) ? string.Empty : argMsTestSetting.Split('=').Last();
Console.WriteLine("--------------------------------------------------------------");
Console.WriteLine("-> Nom projet : " + nomProjet);
Console.WriteLine("-> Version projet : " + versionProjet);
Console.WriteLine("-> Path vers *.features : " + folderProjet);
Console.WriteLine("-> Path vers fichier DLL : " + dllTestFile);
Console.WriteLine("-> Path vers test settings : " + testSetting);
Console.WriteLine("--------------------------------------------------------------\n");
Console.WriteLine("Traitement en cours...");
try
{
MainBL.Analyser(
nomProjet,
versionProjet,
folderProjet,
dllTestFile,
testSetting,
Console.Out);
}
catch (ExceptionFonctionnelle ex)
{
Console.WriteLine(ex.Message);
Journal.EcrireTraceErreur(ex.Message, ex);
}
catch (ExceptionTechnique ex)
{
Console.WriteLine(ex.Message);
Journal.EcrireTraceCritique(ex.Message, ex);
}
catch (Exception ex)
{
Console.WriteLine(ex.Message);
Journal.EcrireTraceCritique(ex.Message, ex);
}
Console.WriteLine("\n\nAppuyer sur ENTREE pour fermer le programme.");
Console.ReadLine();
}
