private static void MarkCanonicalTranscripts(MutableTranscript[] transcripts)
{
var ccdsIdToEnsemblId = CcdsReader.GetCcdsIdToEnsemblId(ExternalFiles.CcdsFile.FilePath);
var lrgTranscriptIds = LrgReader.GetTranscriptIds(ExternalFiles.LrgFile.FilePath, ccdsIdToEnsemblId);
Logger.Write("- marking canonical transcripts... ");
var canonical = new CanonicalTranscriptMarker(lrgTranscriptIds);
int numCanonicalTranscripts = canonical.MarkTranscripts(transcripts);
Logger.WriteLine($"{numCanonicalTranscripts:N0} marked.");
}
/// <summary>
/// constructor
/// </summary>
public CanonicalTranscriptMarker(string lrgPath)
{
_lrgEntries = LrgReader.GetTranscriptIds(lrgPath);
}
