//! This function is called at each frame
public void Update()
{
if (_paused)
{
Logger.Log("ReactionEngine::Update paused", Logger.Level.TRACE);
}
else
{
_fick.react();
if (enableShufflingMediumOrder)
{
LinkedListExtensions.Shuffle <Medium>(_mediums);
}
foreach (Medium medium in _mediums)
{
medium.Update();
}
Logger.Log("ReactionEngine::Update() update of mediums done", Logger.Level.TRACE);
if (!enableSequential)
{
foreach (Medium medium in _mediums)
{
medium.updateMoleculesConcentrations();
}
Logger.Log("ReactionEngine::Update() update of mol cc in mediums done", Logger.Level.TRACE);
}
}
}
/*!
* \brief Execute everything about simulation into the Medium
*/
public void Update()
{
if (enableShufflingReactionOrder)
{
LinkedListExtensions.Shuffle <IReaction>(_reactions);
}
foreach (IReaction reaction in _reactions)
{
if (Logger.isLevel(Logger.Level.TRACE))
{
PromoterReaction promoter = reaction as PromoterReaction;
if (promoter != null)
{
Logger.Log("Medium::Update reaction.react(" + _molecules + ") with reaction=" + reaction, Logger.Level.TRACE);
}
}
reaction.react(_molecules);
}
applyVariation();
if (_enableNoise)
{
float noise;
foreach (Molecule m in _molecules)
{
noise = _numberGenerator.getNumber();
if (_enableSequential)
{
m.addConcentration(noise);
}
else
{
m.addNewConcentration(noise);
}
}
}
//TODO improve check that it's the medium of the hero bacterium Cellia
//TODO refactor interactions out of medium
if (_name == "Cellia")
{
manageMoleculeConcentrationWithKey("AMPI");
if (GameStateController.isAdminMode)
{
//TODO manage this differently
manageMoleculeConcentrationWithKey("AMPR");
manageMoleculeConcentrationWithKey("ATC");
manageMoleculeConcentrationWithKey("FLUO1");
manageMoleculeConcentrationWithKey("FLUO2");
manageMoleculeConcentrationWithKey("IPTG");
manageMoleculeConcentrationWithKey("MOV");
manageMoleculeConcentrationWithKey("REPR1");
manageMoleculeConcentrationWithKey("REPR2");
manageMoleculeConcentrationWithKey("REPR3");
manageMoleculeConcentrationWithKey("REPR4");
}
}
}
