private void BuildLibrary(string inputDir, IEnumerable <string> inputFiles, string libraryPath,
bool keepRedundant, bool includeAmbiguous, bool filterPeptides, bool append, IrtStandard irtStandard)
{
EnsurePeptideSettings();
var buildLibraryDlg = ShowDialog <BuildLibraryDlg>(PeptideSettingsUI.ShowBuildLibraryDlg);
List <string> inputPaths = null;
if (inputFiles != null)
{
inputPaths = new List <string>(inputFiles).ConvertAll(f => Path.Combine(inputDir, f));
}
string autoLibPath = null;
RunUI(() =>
{
if (libraryPath != null)
{
buildLibraryDlg.LibraryPath = libraryPath;
}
buildLibraryDlg.LibraryName = _libraryName;
autoLibPath = buildLibraryDlg.LibraryPath;
buildLibraryDlg.LibraryKeepRedundant = keepRedundant;
buildLibraryDlg.IncludeAmbiguousMatches = includeAmbiguous;
buildLibraryDlg.LibraryFilterPeptides = filterPeptides;
buildLibraryDlg.LibraryBuildAction = (append ?
LibraryBuildAction.Append : LibraryBuildAction.Create);
if (irtStandard != null && !irtStandard.Equals(IrtStandard.EMPTY))
{
buildLibraryDlg.IrtStandard = irtStandard;
}
buildLibraryDlg.OkWizardPage();
if (inputPaths != null)
{
buildLibraryDlg.AddInputFiles(inputPaths);
}
else
{
buildLibraryDlg.AddDirectory(inputDir);
}
});
OkDialog(buildLibraryDlg, buildLibraryDlg.OkWizardPage);
if (inputPaths != null)
{
foreach (var inputFile in inputPaths)
{
if (BiblioSpecLiteBuilder.HasEmbeddedSpectra(inputFile))
{
var embeddedSpectraDlg = WaitForOpenForm <MultiButtonMsgDlg>();
OkDialog(embeddedSpectraDlg, embeddedSpectraDlg.BtnYesClick);
}
}
}
Assert.AreEqual(TestFilesDir.GetTestPath(_libraryName + BiblioSpecLiteSpec.EXT),
autoLibPath);
}
private void BuildLibrary(string inputDir, IEnumerable <string> inputFiles,
string libraryPath, bool keepRedundant, bool filterPeptides, bool append, IrtStandard irtStandard)
{
EnsurePeptideSettings();
var buildLibraryDlg = ShowDialog <BuildLibraryDlg>(PeptideSettingsUI.ShowBuildLibraryDlg);
List <string> inputPaths = null;
if (inputFiles != null)
{
inputPaths = new List <string>(inputFiles).ConvertAll(f => Path.Combine(inputDir, f));
}
string autoLibPath = null;
RunUI(() =>
{
if (libraryPath != null)
{
buildLibraryDlg.LibraryPath = libraryPath;
}
buildLibraryDlg.LibraryName = _libraryName;
autoLibPath = buildLibraryDlg.LibraryPath;
buildLibraryDlg.LibraryKeepRedundant = keepRedundant;
buildLibraryDlg.LibraryFilterPeptides = filterPeptides;
buildLibraryDlg.LibraryBuildAction = (append ?
LibraryBuildAction.Append : LibraryBuildAction.Create);
if (irtStandard != null && !irtStandard.Equals(IrtStandard.NULL))
{
buildLibraryDlg.IrtStandard = irtStandard;
}
buildLibraryDlg.OkWizardPage();
if (inputPaths != null)
{
buildLibraryDlg.AddInputFiles(inputPaths);
}
else
{
buildLibraryDlg.AddDirectory(inputDir);
}
});
OkDialog(buildLibraryDlg, buildLibraryDlg.OkWizardPage);
Assert.AreEqual(TestFilesDir.GetTestPath(_libraryName + BiblioSpecLiteSpec.EXT),
autoLibPath);
}