public PredictionReader(Stream stream, IDictionary <ushort, IChromosome> refIndexToChromosome,
IntermediateIoCommon.FileType expectedFileType)
{
_refIndexToChromosome = refIndexToChromosome;
_reader = FileUtilities.GetStreamReader(stream);
IntermediateIoCommon.ReadHeader(_reader, expectedFileType);
}
internal PredictionWriter(StreamWriter writer, IntermediateIoHeader header,
IntermediateIoCommon.FileType fileType)
{
_writer = writer;
_writer.NewLine = "\n";
header.Write(_writer, fileType);
}
internal void Write(StreamWriter writer, IntermediateIoCommon.FileType fileType)
{
writer.WriteLine($"{IntermediateIoCommon.Header}\t{(byte)fileType}");
writer.WriteLine($"{VepVersion}\t{VepReleaseTicks}\t{(byte)Source}\t{(byte)GenomeAssembly}\t{_numRefSeqs}");
}
