public string GetParenTaxa(ITaxon taxon)
{
if (taxon == null)
{
return("");
}
var parents = new StringBuilder();
var parentRelations = taxon.GetAllParentTaxonRelations(_user, null, false, false);
foreach (var taxonRelation in parentRelations)
{
var relatedTaxon = taxonRelation.ParentTaxon;
if (parents.Length > 0)
{
parents.Append("; ");
}
parents.Append(relatedTaxon.Category.Name);
parents.Append(": ");
parents.Append(relatedTaxon.GetLabel());
}
return(parents.ToString());
}
/// <summary>
/// Gets the taxonomic hierarchy, for the specified taxon.
/// </summary>
/// <param name="user">The user context.</param>
/// <param name="taxon">The taxon.</param>
/// <returns>An ordered list of parent taxa, forming the taxonomic hierarchy.</returns>
private List <TaxonViewModel> GetParentTaxa(IUserContext user, ITaxon taxon)
{
var taxaRelations = taxon.GetAllParentTaxonRelations(user, null, false, false, true);
var distinctParentTaxa = taxaRelations.GroupBy(x => x.ParentTaxon.Id).Select(x => x.First().ParentTaxon).Where(x => x.Id > 0).ToList();
return(distinctParentTaxa.Select(parentTaxon => new TaxonViewModel
{
Author = parentTaxon.Author,
Category = parentTaxon.Category.Name,
CommonName = parentTaxon.CommonName.IsNotEmpty() ? parentTaxon.CommonName : string.Empty,
ScientificName = parentTaxon.ScientificName.IsNotEmpty() ? parentTaxon.ScientificName : string.Empty,
//SortOrder = parentTaxon.SortOrder,
TaxonId = parentTaxon.Id,
//CategoryId = parentTaxon.Category.Id
}).ToList());
}
public void GetTaxonParents()
{
using (ShimsContext.Create())
{
//Arrange
LoginApplicationUserAndSetSessionVariables();
SetSwedishLanguage();
IUserContext userContext = ApplicationUserContextSV;
ITaxon taxon = CoreData.TaxonManager.GetTaxon(userContext, 6008300);
//Act
var parents = taxon.GetAllParentTaxonRelations(userContext, null, false, false);
//Assert
Assert.IsNotNull(parents);
}
}
//private static IPerson GetCreatedByPerson(IUserContext userContext, int createdBy)
//{
// IPerson person;
// IUser user;
// try
// {
// user = CoreData.UserManager.GetUser(userContext, createdBy);
// }
// catch (Exception)
// {
// // user does not exist in UserAdmin system
// user = null;
// }
// if ((user.IsNotNull()) &&
// (user.Type == UserType.Person) &&
// (user.PersonId.HasValue))
// {
// person = CoreData.UserManager.GetPerson(userContext, user.PersonId.Value);
// }
// else
// {
// person = null;
// }
// return person;
//}
/// <summary>
/// The create.
/// </summary>
/// <param name="userContext">
/// The user context.
/// </param>
/// <param name="taxon">
/// The taxon.
/// </param>
/// <param name="revisionId">
/// The revision id.
/// </param>
/// <returns>
/// The <see cref="TaxonSummaryViewModel"/>.
/// </returns>
public static TaxonSummaryViewModel Create(IUserContext userContext, ITaxon taxon, int?revisionId)
{
var model = new TaxonSummaryViewModel();
IPerson person;
bool isInRevision = DyntaxaHelper.IsInRevision(userContext, revisionId);
bool isUserTaxonEditor = userContext.IsTaxonEditor();
model.Id = taxon.Id.ToString();
model.Guid = taxon.Guid ?? string.Empty;
model.CategoryId = taxon.Category != null ? taxon.Category.Id : 0;
model.Category = taxon.Category != null ? taxon.Category.Name : string.Empty;
model.IsMicrospecies = taxon.IsMicrospecies;
model.CategorySortOrder = taxon.Category != null ? taxon.Category.SortOrder : 0;
model.ConceptDefinition = taxon.GetConceptDefinition(userContext) ?? "-";
model.AlertStatus = (TaxonAlertStatusId)taxon.AlertStatus.Id;
model.AlertImageUrl = GetAlertImageUrl(model.AlertStatus);
person = taxon.GetModifiedByPerson(userContext);
//IPerson createdByPerson = GetCreatedByPerson(userContext, taxon.CreatedBy);
//string createdFullName = createdByPerson.FullName;
if (person.IsNull())
{
model.UpdateInformation = string.Format("{0} ({1})", taxon.ModifiedDate.ToShortDateString(), String.Empty);
}
else
{
model.UpdateInformation = string.Format("{0} ({1})", taxon.ModifiedDate.ToShortDateString(), person.FullName);
}
model.ValidToInformation = string.Format("{0} ({1})", taxon.ValidToDate.ToShortDateString(), taxon.ModifiedByPerson);
model.CreatedInformation = string.Format("{0} ({1})", taxon.CreatedDate.ToShortDateString(), taxon.ModifiedByPerson);
model.Validity = GetValidityDescription(taxon);
if (taxon.ScientificName.IsNotEmpty())
{
model.ScientificName = new TaxonNameAuthorViewModel(taxon.ScientificName, taxon.Author);
}
if (taxon.CommonName.IsNotEmpty())
{
model.CommonName = new TaxonNameAuthorViewModel(taxon.CommonName, string.Empty);
}
// Synonyms
//model.Synonyms = new List<TaxonNameViewModel>();
//var synonyms = taxon.GetSynonyms(userContext, true);
//if (synonyms != null)
//{
// foreach (ITaxonName taxonName in synonyms)
// {
// model.Synonyms.Add(new TaxonNameViewModel(taxonName, taxon));
// }
//}
model.Synonyms = taxon.GetSynonymsViewModel(isInRevision, isUserTaxonEditor, false);
model.ProParteSynonyms = taxon.GetProParteSynonymsViewModel(isInRevision, isUserTaxonEditor);
model.MisappliedNames = taxon.GetMisappliedNamesViewModel(isInRevision, isUserTaxonEditor);
// Other valid common names
// todo - change implementation?
//model.OtherValidCommonNames = new List<string>();
//if (!taxon.CommonName.IsEmpty())
//{
// model.OtherValidCommonNames.AddRange(
// from taxonName in taxon.GetTaxonNames(userContext)
// where
// taxonName.Category.Id == (int)TaxonNameCategoryId.SwedishName &&
// taxonName.Version != taxon.GetCommonName(userContext).Version
// select taxonName.Name);
// // todo - även ha med att namnet är gilitigt. Hur ser man det???
//}
model.OtherValidCommonNames = taxon.GetNotRecommendedSwedishNamesViewModel(isInRevision, isUserTaxonEditor);
// Remove other valid common names from synonyms
if (model.OtherValidCommonNames.IsNotEmpty())
{
List <TaxonNameViewModel> newSynonymList = new List <TaxonNameViewModel>();
foreach (TaxonNameViewModel synonym in model.Synonyms)
{
if (model.OtherValidCommonNames.All(x => x.Id != synonym.Id))
{
newSynonymList.Add(synonym);
}
}
model.Synonyms = newSynonymList;
}
// Classification
var allParentTaxa = taxon.GetAllParentTaxonRelations(userContext, null, isInRevision, false, true);
var distinctParentTaxa = allParentTaxa.GroupBy(x => x.ParentTaxon.Id).Select(x => x.First().ParentTaxon).ToList();
model.Classification = new List <RelatedTaxonViewModel>();
foreach (ITaxon relatedTaxon in distinctParentTaxa)
{
if (relatedTaxon.Category.IsTaxonomic)
{
model.Classification.Add(new RelatedTaxonViewModel(relatedTaxon, relatedTaxon.Category, null));
}
}
// Species fact
try
{
// Dictionary<FactorId, SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetSpeciesFacts(taxon, new [] {FactorId.SwedishOccurence, FactorId.SwedishHistory});
Dictionary <FactorId, SpeciesFact> dicSpeciesFacts = SpeciesFactHelper.GetCommonDyntaxaSpeciesFacts(userContext, taxon);
model.SwedishHistory = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, FactorId.SwedishHistory);
model.SwedishOccurrence = SpeciesFactHelper.GetFactorValue(dicSpeciesFacts, FactorId.SwedishOccurrence);
// If swedish occurrence or swedish history is changed in the current revision, then show those values instead.
if (DyntaxaHelper.IsInRevision(userContext, revisionId))
{
DyntaxaInternalTaxonServiceManager internalTaxonServiceManager =
new DyntaxaInternalTaxonServiceManager();
// Check if Swedish occurrence is stored in Taxon database in this revision.
DyntaxaRevisionSpeciesFact swedishOccurrenceRevisionSpeciesFact =
internalTaxonServiceManager.GetDyntaxaRevisionSpeciesFact(
userContext,
(Int32)FactorId.SwedishOccurrence,
taxon.Id,
revisionId.Value);
if (swedishOccurrenceRevisionSpeciesFact != null)
{
SpeciesFactModelManager speciesFactModel = new SpeciesFactModelManager(taxon, userContext);
TaxonModelManager.UpdateOldSpeciesFactModelWithDyntaxaRevisionSpeciesFactValues(userContext, speciesFactModel.SwedishOccurrenceSpeciesFact, swedishOccurrenceRevisionSpeciesFact);
model.SwedishOccurrence = speciesFactModel.SwedishOccurrenceSpeciesFact.GetStatusOriginalLabel();
}
// Check if Swedish history is stored in Taxon database in this revision.
DyntaxaRevisionSpeciesFact swedishHistoryRevisionSpeciesFact =
internalTaxonServiceManager.GetDyntaxaRevisionSpeciesFact(
userContext,
(Int32)FactorId.SwedishHistory,
taxon.Id,
revisionId.Value);
if (swedishHistoryRevisionSpeciesFact != null)
{
if (swedishHistoryRevisionSpeciesFact.StatusId.HasValue)
{
SpeciesFactModelManager speciesFactModel = new SpeciesFactModelManager(taxon, userContext);
TaxonModelManager.UpdateOldSpeciesFactModelWithDyntaxaRevisionSpeciesFactValues(userContext, speciesFactModel.SwedishHistorySpeciesFact, swedishHistoryRevisionSpeciesFact);
model.SwedishHistory = speciesFactModel.SwedishHistorySpeciesFact.GetStatusOriginalLabel();
}
else // swedish history is deleted in this revision
{
model.SwedishHistory = "";
}
}
}
}
catch (Exception)
{
// the taxon did not exist in Artfakta
}
return(model);
}