public static void Write(ISequenceFormat sf, string filename, IEnumerable<Sequence> seqs)
{
using (StreamWriter sw = new StreamWriter(filename))
{
foreach (Sequence seq in seqs)
{
sf.WriteSequence(sw, seq);
}
}
}
public static void Write(ISequenceFormat sf, string filename, IEnumerable <Sequence> seqs)
{
using (StreamWriter sw = new StreamWriter(filename))
{
foreach (Sequence seq in seqs)
{
sf.WriteSequence(sw, seq);
}
}
}
public static Dictionary<string, string> ReadAccessNumberReferenceMap(ISequenceFormat sf, string filename, IAccessNumberParser parser)
{
Dictionary<string, string> result = new Dictionary<string, string>();
using (StreamReader sr = new StreamReader(filename))
{
Sequence seq;
while ((seq = sf.ReadSequence(sr)) != null)
{
result[parser.GetValue(seq.Name)] = seq.Reference;
}
}
return result;
}
public static List<Sequence> Read(ISequenceFormat sf, string filename)
{
List<Sequence> result = new List<Sequence>();
using (StreamReader sr = new StreamReader(filename))
{
Sequence seq;
while ((seq = sf.ReadSequence(sr)) != null)
{
result.Add(seq);
}
}
return result;
}
public static Dictionary <string, string> ReadAccessNumberReferenceMap(ISequenceFormat sf, string filename, IAccessNumberParser parser)
{
Dictionary <string, string> result = new Dictionary <string, string>();
using (StreamReader sr = new StreamReader(filename))
{
Sequence seq;
while ((seq = sf.ReadSequence(sr)) != null)
{
result[parser.GetValue(seq.Name)] = seq.Reference;
}
}
return(result);
}
public static List <Sequence> Read(ISequenceFormat sf, string filename)
{
List <Sequence> result = new List <Sequence>();
using (StreamReader sr = new StreamReader(filename))
{
Sequence seq;
while ((seq = sf.ReadSequence(sr)) != null)
{
result.Add(seq);
}
}
return(result);
}
