public TestBed(string protocolFilePath, [NotNull] IReportScriptOut reportScriptOut)
{
Out = reportScriptOut ?? throw new ArgumentNullException(nameof(reportScriptOut));
protocolFilePath = CheckFileExistsInCurrentFolderOrScriptsFolder(protocolFilePath);
var protocol = (IAssayPackageProtocol)AssayPackageManager.AssayPackageManager.UnPack(protocolFilePath);
if (string.IsNullOrEmpty(protocol.AssayRunDetailsFilePath) || !File.Exists(protocol.AssayRunDetailsFilePath))
{
throw new Exception($"The protocol {Path.GetFullPath(protocolFilePath)} is not ready for analysis. Open it in MyAssays Analysis and save, then try again.");
}
var pluginsInputStorage = new PluginsInputStorage();
pluginsInputStorage.StoreAssayXml(protocol.AssayXml.OuterXml);
pluginsInputStorage.LoadRunDetails(protocol.AssayRunDetailsFilePath);
pluginsInputStorage.InitialiseTransformInputs();
var analysisLoggerMock = new Mock <IAnalysisLogger>();
_data = AnalysisProcessorData.Load(
pluginsInputStorage.ConfigFilePath,
pluginsInputStorage.RunDetailsFilePath,
pluginsInputStorage.PmcFilePath,
pluginsInputStorage.FieldDataFilePath,
pluginsInputStorage.AssayFilePath,
analysisLoggerMock.Object);
In = new ReportInMock(_data);
_script = new Script();
((ScriptBase)_script).Init(In, Out);
}
internal void Init([NotNull] ReportIn reportIn, [NotNull] IReportScriptOut reportOut)
{
In = reportIn ?? throw new ArgumentNullException(nameof(reportIn));
Out = reportOut ?? throw new ArgumentNullException(nameof(reportOut));
}