public IParameterValueCache CreatePopulation(PopulationSettings matlabPopulationSettings, IEnumerable <MoleculeOntogeny> moleculeOntogenies)
{
var populationSettings = _populationSettingsMapper.MapFrom(matlabPopulationSettings);
var population = _randomPopulationFactory.CreateFor(populationSettings, new CancellationToken()).Result;
foreach (var moleculeOntogeny in moleculeOntogenies)
{
var allOntogeniesForSpecies = _ontogenyRepository.AllFor(matlabPopulationSettings.Individual.OriginData.Species).ToList();
if (!allOntogeniesForSpecies.Any())
{
continue;
}
var ontogeny = allOntogeniesForSpecies.FindByName(moleculeOntogeny.Ontogeny);
if (ontogeny == null)
{
continue;
}
var molecule = _individualEnzymeFactory.CreateEmpty().WithName(moleculeOntogeny.Molecule);
molecule.Ontogeny = ontogeny;
population.AddMolecule(molecule);
}
_ontogenyVariabilityUpdater.UpdateAllOntogenies(population);
return(population.IndividualPropertiesCache);
}
public IParameterValueCache CreatePopulation(PopulationSettings matlabPopulationSettings, IEnumerable <string> moleculeNames)
{
var populationSettings = _populationSettingsMapper.MapFrom(matlabPopulationSettings);
var population = _randomPopulationFactory.CreateFor(populationSettings, new CancellationToken()).Result;
return(population.IndividualPropertiesCache);
}
public CreatePopulationResults CreatePopulation(PopulationCharacteristics populationCharacteristics)
{
var populationSettings = _populationSettingsMapper.MapToModel(populationCharacteristics, new SnapshotContext()).Result;
validate(populationSettings);
var population = _randomPopulationFactory.CreateFor(populationSettings, new CancellationToken(), seed: populationCharacteristics.Seed).Result;
foreach (var moleculeOntogeny in populationCharacteristics.MoleculeOntogenies)
{
var allOntogeniesForSpecies = _ontogenyRepository.AllFor(populationCharacteristics.Individual.OriginData.Species);
if (!allOntogeniesForSpecies.Any())
{
continue;
}
var ontogeny = allOntogeniesForSpecies.FindByName(moleculeOntogeny.Ontogeny);
if (ontogeny == null)
{
continue;
}
var molecule = _individualEnzymeFactory.CreateEmpty().WithName(moleculeOntogeny.Molecule);
molecule.Ontogeny = ontogeny;
population.AddMolecule(molecule);
}
_ontogenyVariabilityUpdater.UpdateAllOntogenies(population);
return(new CreatePopulationResults(population.IndividualValuesCache, population.Seed));
}
public override async Task <ModelPopulation> MapToModel(SnapshotPopulation snapshot, SnapshotContext snapshotContext)
{
var randomPopulationSettings = await _randomPopulationSettingsMapper.MapToModel(snapshot.Settings, snapshotContext);
//Do not add default molecule variability as this will be loaded from snapshot
var population = await _randomPopulationFactory.CreateFor(randomPopulationSettings, CancellationToken.None, snapshot.Seed, addMoleculeParametersVariability : false);
MapSnapshotPropertiesToModel(snapshot, population);
await _advancedParameterMapper.MapToModel(snapshot.AdvancedParameters, population, snapshotContext);
return(population);
}
public async void CreatePopulation()
{
_view.CreatingPopulation = true;
_cancelationTokenSource = new CancellationTokenSource();
try
{
Population = await _randomPopulationFactory.CreateFor(_populationSettingsMapper.MapFrom(_populationSettingsDTO), _cancelationTokenSource.Token);
PopulationCreated = true;
raisePopulationCreationFinish(success: true);
}
catch (OperationCanceledException)
{
raisePopulationCreationFinish(success: false);
}
finally
{
_view.CreatingPopulation = false;
}
}