public static IParamContainer SetCompression(
this IParamContainer pc,
BinaryDataCompressionType compressionType)
{
switch (compressionType)
{
case BinaryDataCompressionType.NoCompression:
return(pc.SetNoCompression());
case BinaryDataCompressionType.ZLib:
return(pc.SetZlibCompression());
default:
throw new NotSupportedException("Compression type not supported: " + compressionType.ToString());
}
}
private void WriteParamGroup(IParamContainer pc)
{
var msParams = pc.CvParams.Where(x => IsMSParam(x) && HasValidOrEmptyUnit(x));
foreach (var cvp in msParams)
{
writer.WriteStartElement("cvParam");
WriteXmlAttribute("cvRef", "MS", true);
WriteXmlAttribute("accession", cvp.CvAccession, true);
WriteXmlAttribute("name", cvp.CvAccession, true);
WriteXmlAttribute("value", cvp.GetStringOrDefault(), false);
if (cvp.HasUnit())
{
WriteXmlAttribute("unitCvRef", ParseCvRef(cvp.CvUnitAccession), true);
WriteXmlAttribute("unitAccession", cvp.CvUnitAccession, true);
WriteXmlAttribute("unitName", cvp.CvUnitAccession, true);
}
writer.WriteEndElement();
}
var userParams = pc.UserParams.Where(x => HasValidOrEmptyUnit(x));
foreach (var up in userParams)
{
writer.WriteStartElement("userParam");
WriteXmlAttribute("name", up.Name, true);
WriteXmlAttribute("value", up.GetStringOrDefault(), false);
if (up.HasUnit())
{
WriteXmlAttribute("unitCvRef", ParseCvRef(up.CvUnitAccession), true);
WriteXmlAttribute("unitAccession", up.CvUnitAccession, true);
WriteXmlAttribute("unitName", up.CvUnitAccession, true);
}
writer.WriteEndElement();
}
}
public static IParamContainer SetBinaryDataType(
this IParamContainer pc,
BinaryDataType binaryDataType)
{
switch (binaryDataType)
{
case BinaryDataType.Float32:
return(pc.Set32BitFloat());
case BinaryDataType.Float64:
return(pc.Set64BitFloat());
case BinaryDataType.Int32:
return(pc.Set32BitInteger());
case BinaryDataType.Int64:
return(pc.Set64BitInteger());
default:
throw new NotSupportedException("Data type not supported: " + binaryDataType.ToString());
}
}
public static bool IsZlibCompression(
this IParamContainer pc)
{
return(pc.HasCvParam("MS_1000574"));
}
/// <summary>
/// Signed 32-bit little-endian integer. [PSI:MS]
/// </summary>
public static IParamContainer Set32BitInteger(
this IParamContainer pc)
{
return(pc.SetCvParam("MS:1000519").NoUnit());
}
public static bool Is32BitInteger(
this IParamContainer pc)
{
return(pc.HasCvParam("MS:1000519"));
}
/// <summary>
/// 32-bit precision little-endian floating point conforming to IEEE-754. [PSI:MS]
/// </summary>
public static IParamContainer Set32BitFloat(
this IParamContainer pc)
{
return(pc.SetCvParam("MS:1000521").NoUnit());
}
public static bool Is32BitFloat(
this IParamContainer pc)
{
return(pc.HasCvParam("MS:1000521"));
}
/// <summary>
/// Compression using MS-Numpress short logged float compression. [https://github.com/fickludd/ms-numpress]
/// </summary>
public static IParamContainer SetMSNumpressShortLoggedFloatCompression(
this IParamContainer pc)
{
return(pc.SetCvParam("MS:1002314").NoUnit());
}
internal ParamEdit(IParamContainer pc)
{
this.ParamContainer = pc;
}
/// <summary>
/// Compression using MS-Numpress linear prediction compression. [https://github.com/fickludd/ms-numpress]
/// </summary>
public static IParamContainer SetMSNumpressLinearPredictionCompression(
this IParamContainer pc)
{
return(pc.SetCvParam("MS:1002312").NoUnit());
}
/// <summary>
/// Compression using MS-Numpress positive integer compression. [https://github.com/fickludd/ms-numpress]
/// </summary>
public static IParamContainer SetMSNumpressPositiveIntegerCompression(
this IParamContainer pc)
{
return(pc.SetCvParam("MS:1002313").NoUnit());
}
/// <summary>
/// Zlib (gzip) Compression. [PSI:MS]
/// </summary>
public static IParamContainer SetZlibCompression(
this IParamContainer pc)
{
return(pc.SetCvParam("MS_1000574").NoUnit());
}
public static IParamEdit BeginParamEdit(
this IParamContainer pc)
{
return(new ParamEdit(pc));
}
public static bool IsNoCompression(
this IParamContainer pc)
{
return(pc.HasCvParam("MS:1000576"));
}
/// <summary>
/// No Compression. [PSI:MS]
/// </summary>
public static IParamContainer SetNoCompression(
this IParamContainer pc)
{
return(pc.SetCvParam("MS:1000576").NoUnit());
}
public static bool IsTimeArray(
this IParamContainer pc)
{
return(pc.HasCvParam("MS:1000595"));
}
public static bool IsIntensityArray(
this IParamContainer pc)
{
return(pc.HasCvParam("MS:1000515"));
}
/// <summary>
/// A data array of m/z values. [PSI:MS]
/// </summary>
public static IParamContainer SetMzArray(
this IParamContainer pc)
{
return(pc.SetCvParam("MS:1000514").PSIMS_Mz());
}