protected override void Context()
 {
     _spatialStructureFactory      = A.Fake <IPKSimSpatialStructureFactory>();
     _modelObserverQuery           = A.Fake <IModelObserverQuery>();
     _modelPassiveTransportQuery   = A.Fake <IModelPassiveTransportQuery>();
     _parameterStartValueCreator   = A.Fake <IPKSimParameterStartValuesCreator>();
     _moleculesAndReactionsCreator = A.Fake <IMoleculesAndReactionsCreator>();
     _eventBuildingBlockCreator    = A.Fake <IEventBuildingBlockCreator>();
     _moleculeStartValueCreator    = A.Fake <IPKSimMoleculeStartValuesCreator>();
     _moleculeCalculationRetriever = A.Fake <IMoleculeCalculationRetriever>();
     _distributedTableConverter    = A.Fake <IDistributedParameterToTableParameterConverter>();
     _parameterDefaultStateUpdater = A.Fake <IParameterDefaultStateUpdater>();
     _cm1        = new CoreCalculationMethod();
     _cm2        = new CoreCalculationMethod();
     _simulation = new IndividualSimulation {
         Properties = new SimulationProperties()
     };
     _simulation.SimulationSettings = new SimulationSettings();
     _simulation.ModelConfiguration = new ModelConfiguration();
     _individual                      = new Individual().WithName("MyIndividuyal");
     _compound                        = A.Fake <Compound>().WithName("MyCompound");
     _protocol                        = new SimpleProtocol().WithName("MyProtocol");
     _spatialStructure                = A.Fake <ISpatialStructure>();
     _passiveTransportBuilingBlock    = A.Fake <IPassiveTransportBuildingBlock>();
     _observerBuildingBlock           = A.Fake <IObserverBuildingBlock>();
     _eventBuildingBlock              = A.Fake <IEventGroupBuildingBlock>();
     _parameterValuesBuildingBlock    = A.Fake <IParameterStartValuesBuildingBlock>();
     _moleculeStartValueBuildingBlock = A.Fake <IMoleculeStartValuesBuildingBlock>();
     _simulation.AddUsedBuildingBlock(new UsedBuildingBlock("Individual", PKSimBuildingBlockType.Individual)
     {
         BuildingBlock = _individual
     });
     _simulation.AddUsedBuildingBlock(new UsedBuildingBlock("Compound", PKSimBuildingBlockType.Compound)
     {
         BuildingBlock = _compound
     });
     _simulation.AddUsedBuildingBlock(new UsedBuildingBlock("Protocol", PKSimBuildingBlockType.Protocol)
     {
         BuildingBlock = _protocol
     });
     A.CallTo(() => _moleculeCalculationRetriever.AllMoleculeCalculationMethodsUsedBy(_simulation)).Returns(new[] { _cm1, _cm2 });
     A.CallTo(() => _spatialStructureFactory.CreateFor(_individual, _simulation)).Returns(_spatialStructure);
     A.CallTo(() => _modelPassiveTransportQuery.AllPassiveTransportsFor(_simulation)).Returns(_passiveTransportBuilingBlock);
     A.CallTo(() => _modelObserverQuery.AllObserversFor(A <IMoleculeBuildingBlock> .Ignored, _simulation)).Returns(_observerBuildingBlock);
     A.CallTo(() => _eventBuildingBlockCreator.CreateFor(_simulation)).Returns(_eventBuildingBlock);
     A.CallTo(() => _parameterStartValueCreator.CreateFor(A <IBuildConfiguration> .Ignored, A <Simulation> .Ignored)).Returns(_parameterValuesBuildingBlock);
     A.CallTo(() => _moleculeStartValueCreator.CreateFor(A <IBuildConfiguration> .Ignored, A <Simulation> .Ignored)).Returns(_moleculeStartValueBuildingBlock);
     sut = new BuildConfigurationTask(_spatialStructureFactory, _modelObserverQuery, _modelPassiveTransportQuery, _parameterStartValueCreator,
                                      _moleculesAndReactionsCreator, _eventBuildingBlockCreator, _moleculeStartValueCreator, _moleculeCalculationRetriever,
                                      _distributedTableConverter, _parameterDefaultStateUpdater);
 }
Ejemplo n.º 2
0
 public BuildConfigurationTask(IPKSimSpatialStructureFactory spatialStructureFactory, IModelObserverQuery modelObserverQuery,
                               IModelPassiveTransportQuery modelPassiveTransportQuery, IPKSimParameterStartValuesCreator parameterStartValuesCreator,
                               IMoleculesAndReactionsCreator moleculesAndReactionsCreator, IEventBuildingBlockCreator eventBuildingBlockCreator,
                               IPKSimMoleculeStartValuesCreator moleculeStartValuesCreator, IMoleculeCalculationRetriever moleculeCalculationRetriever,
                               IDistributedParameterToTableParameterConverter distributedParameterToTableParameterConverter)
 {
     _moleculeCalculationRetriever = moleculeCalculationRetriever;
     _distributedParameterToTableParameterConverter = distributedParameterToTableParameterConverter;
     _spatialStructureFactory      = spatialStructureFactory;
     _modelObserverQuery           = modelObserverQuery;
     _modelPassiveTransportQuery   = modelPassiveTransportQuery;
     _parameterStartValuesCreator  = parameterStartValuesCreator;
     _moleculesAndReactionsCreator = moleculesAndReactionsCreator;
     _eventBuildingBlockCreator    = eventBuildingBlockCreator;
     _moleculeStartValuesCreator   = moleculeStartValuesCreator;
     _moleculeCalculationRetriever = moleculeCalculationRetriever;
 }
 protected override void Context()
 {
     _moleculeAndReactionCreator = A.Fake <IMoleculesAndReactionsCreator>();
     _objectBaseFactory          = A.Fake <IObjectBaseFactory>();
     sut = new ReactionBuildingBlockCreator(_moleculeAndReactionCreator, _objectBaseFactory);
 }
 public ReactionBuildingBlockCreator(IMoleculesAndReactionsCreator moleculesAndReactionsCreator, IObjectBaseFactory objectBaseFactory)
 {
     _moleculesAndReactionsCreator = moleculesAndReactionsCreator;
     _objectBaseFactory            = objectBaseFactory;
 }