public bool Equals(IFunctionIdentifier other)
{
if (other == null)
return false;
else if (other is FunctionIdentifier)
return this.Identifier == ((FunctionIdentifier)other).Identifier;
else
return false;
}
protected FunctionPairBase(IGEPGeneticCode geneticCode, IFunctionIdentifier primaryFunction,
IFunctionIdentifier parameterlessFunction)
{
this.PrimaryFunction = primaryFunction;
this.ParameterlessFunction = parameterlessFunction;
if (this.PrimaryFunction == null || this.ParameterlessFunction == null)
throw new GeneticCodeException("Both the Primary Function and the Parameterless Function must be provided.");
if (!geneticCode.FunctionSet[this.ParameterlessFunction].IsParameterless)
throw new GeneticCodeException("The given Parameterless Function must actually be parameterless.");
}
/// <summary> /// Retrieves the first IGEPCodon of the specified CodonType that primarily /// encodes for the IFunction as identified /// by the given IFunctionIdentifier. /// </summary> /// <param name="functionIdentifier"></param> /// <param name="codonType"></param> /// <returns></returns> public abstract IGEPCodon GetCodonEncodingFunction(IFunctionIdentifier functionIdentifier, CodonType codonType = CodonType.Standard);
public override IGEPCodon GetCodonEncodingFunction(IFunctionIdentifier functionIdentifier, CodonType codonType = CodonType.Standard)
{
var codonRow = new CodonRow();
Qry.SelectAllFrom(codonRow)
.InnerJoinSelectingAllOn(codonRow.FunctionPairRowColumn)
.InnerJoinOn(codonRow.FunctionPairRow.PrimaryFunctionRowColumn)
.Where(codonRow.CodonTypeColumn, codonType.ToString())
.Where(codonRow.FunctionPairRow.PrimaryFunctionRow.FunctionIdentifierColumn, functionIdentifier.ToString())
.GoAndExtract(ref codonRow);
return codonRow.ToGEPCodon(this);
}
public FunctionPair(IGEPGeneticCode geneticCode, IFunctionIdentifier primaryFunction,
IFunctionIdentifier parameterlessFunction)
: base(geneticCode, primaryFunction, parameterlessFunction)
{
}
public override IGEPCodon GetCodonEncodingFunction(IFunctionIdentifier functionIdentifier, CodonType codonType = CodonType.Standard)
{
return this.Codons.FirstOrDefault(c => c.Value.CodonType == codonType && c.Value.Functions.PrimaryFunction.Equals(functionIdentifier)).Value;
}
public int CompareTo(IFunctionIdentifier other)
{
return this.Identifier.CompareTo(other.ToString());
}
