private void ReportError_FormClosing(object sender, FormClosingEventArgs e)
{
if (_telemetry != null)
{
if (!string.IsNullOrEmpty(_exceptionMessage))
{
_telemetry.Write(_operation, "Exception", _exceptionMessage);
}
if (!string.IsNullOrEmpty(_callStack))
{
_telemetry.Write(_operation, "Exception", _callStack);
}
if (DialogResult == DialogResult.OK)
{
if (!string.IsNullOrEmpty(UserEmailAddress.Text))
{
_telemetry.Write(_operation, "Exception(Data)", UserEmailAddress.Text);
}
if (!string.IsNullOrEmpty(UserComments.Text))
{
_telemetry.Write(_operation, "Exception(Data)", UserComments.Text);
}
}
}
}
private void WriteTelemetry(string source, string level, string message)
{
if (_telemetry != null)
{
_telemetry.Write(source, level, message);
}
}
/// <summary>
/// Create an OpenXml Word Document from the CML
/// </summary>
/// <param name="cml">Input Chemistry</param>
/// <param name="guid">Bookmark to create</param>
/// <param name="options"></param>
/// <param name="telemetry"></param>
/// <param name="topLeft"></param>
/// <returns></returns>
public static string CreateFromCml(string cml, string guid, OoXmlV4Options options, IChem4WordTelemetry telemetry, Point topLeft)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
CMLConverter cc = new CMLConverter();
Model model = cc.Import(cml);
if (model.AllErrors.Count > 0 || model.AllWarnings.Count > 0)
{
if (model.AllErrors.Count > 0)
{
telemetry.Write(module, "Exception(Data)", string.Join(Environment.NewLine, model.AllErrors));
}
if (model.AllWarnings.Count > 0)
{
telemetry.Write(module, "Exception(Data)", string.Join(Environment.NewLine, model.AllWarnings));
}
}
string fileName = string.Empty;
bool canRender = model.TotalAtomsCount > 0 &&
(model.TotalBondsCount == 0 ||
model.MeanBondLength > Core.Helpers.Constants.BondLengthTolerance / 2);
if (canRender)
{
fileName = Path.Combine(Path.GetTempPath(), $"Chem4Word-V3-{guid}.docx");
string bookmarkName = Core.Helpers.Constants.OoXmlBookmarkPrefix + guid;
// Create a Wordprocessing document.
using (WordprocessingDocument package = WordprocessingDocument.Create(fileName, WordprocessingDocumentType.Document))
{
// Add a new main document part.
MainDocumentPart mdp = package.AddMainDocumentPart();
mdp.Document = new Document(new Body());
Body docbody = package.MainDocumentPart.Document.Body;
// This will be live
AddPictureFromModel(docbody, model, bookmarkName, options, telemetry, topLeft);
// Save changes to the main document part.
package.MainDocumentPart.Document.Save();
}
}
return(fileName);
}
private void OnReleasesPageLinkClicked(object sender, LinkLabelLinkClickedEventArgs e)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
_telemetry.Write(module, "Action", "Triggered");
try
{
Process.Start("https://github.com/Chem4Word/Version3/releases/latest");
DialogResult = DialogResult.Cancel;
}
catch (Exception ex)
{
new ReportError(_telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex).ShowDialog();
}
}
private void ReportError_FormClosing(object sender, FormClosingEventArgs e)
{
string answer = richTextBox1.Text;
if (!string.IsNullOrEmpty(_exceptionMessage))
{
_telemetry.Write(_operation, "Exception", _exceptionMessage);
}
if (!string.IsNullOrEmpty(_callStack))
{
_telemetry.Write(_operation, "Exception", _callStack);
}
if (DialogResult == DialogResult.OK)
{
if (!string.IsNullOrEmpty(answer))
{
_telemetry.Write(_operation, "Exception(Data)", answer);
}
}
}
public OoXmlRenderer(Model.Model model, Options options, IChem4WordTelemetry telemetry, Point topLeft)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
_options = options;
_telemetry = telemetry;
_topLeft = topLeft;
_telemetry.Write(module, "Verbose", "Called");
LoadFont();
_chemistryModel = model;
DetermineInitialExtents();
}
public AutomaticUpdate(IChem4WordTelemetry telemetry)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
_telemetry = telemetry;
InitializeComponent();
_telemetry.Write(module, "AutomaticUpdate", "Shown");
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex).ShowDialog();
}
}
public Run GenerateRun()
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
_telemetry.Write(module, "Verbose", "Called");
//start off progress monitoring
Progress pb = new Progress();
pb.TopLeft = _topLeft;
//lists of objects for drawing
_atomLabelCharacters = new List <AtomLabelCharacter>();
_bondLines = new List <BondLine>();
Stopwatch swr = new Stopwatch();
Stopwatch sw = new Stopwatch();
//Create a run
Run run = new Run();
sw.Start();
swr.Start();
//set the median bond length
_medianBondLength = GeometryTool.GetMedianBondLength2D(_chemistryModel.AllBonds);
int moleculeNo = 0;
foreach (Molecule mol in _chemistryModel.Molecules)
{
moleculeNo++;
// Step 1- gather the atom information together
Debug.WriteLine($"{module} Starting Step 1");
//_telemetry.Write(module, "Verbose", $"Starting Step 1 for molecule {moleculeNo}");
ProcessAtoms(mol, pb, moleculeNo, _pt);
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", $"Step 1 for molecule {moleculeNo} took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
// Step 2- gather the bond information together
Debug.WriteLine($"{module} Starting Step 2");
//_telemetry.Write(module, "Verbose", $"Starting Step 2 for molecule {moleculeNo}");
ProcessBonds(mol, pb, moleculeNo);
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", $"Step 2 for molecule {moleculeNo} took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
if (_options.ShowRingCentres)
{
// Save Rings for later
foreach (Ring ring in mol.Rings)
{
_rings.Add(ring.UniqueID, ring);
}
}
}
Debug.WriteLine($"{module} Starting Step 3");
//_telemetry.Write(module, "Verbose", "Starting Step 3");
IncreaseCanvasSize();
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", "Step 3 took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
if (_options.ClipLines)
{
Debug.WriteLine($"{module} Starting Step 4");
//_telemetry.Write(module, "Verbose", "Starting Step 4");
#region Step 4 - Shrink bond lines
ShrinkBondLinesPass1(pb);
ShrinkBondLinesPass2(pb);
#endregion Step 4 - Shrink bond lines
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", "Step 4 took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
}
Debug.WriteLine($"{module} Starting Step 5");
//_telemetry.Write(module, "Verbose", "Starting Step 5");
#region Step 5 - Create main OoXml drawing objects
Drawing drawing1 = new Drawing();
A.Graphic graphic1 = CreateGraphic();
A.GraphicData graphicData1 = CreateGraphicData();
Wpg.WordprocessingGroup wordprocessingGroup1 = new Wpg.WordprocessingGroup();
// Create Inline Drawing using canvas extents
Wp.Inline inline1 = CreateInline(graphicData1, wordprocessingGroup1);
#endregion Step 5 - Create main OoXml drawing objects
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", "Step 5 took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
#region Step 5a - Diagnostics
if (_options.ShowMoleculeBoundingBoxes)
{
DrawBox(wordprocessingGroup1, _modelExtents, "00ff00", 1);
foreach (Molecule mol in _chemistryModel.Molecules)
{
DrawBox(wordprocessingGroup1, mol.BoundingBox, "0000ff", 1);
DrawBox(wordprocessingGroup1, MoleculeExtents(mol), "ff0000", 1);
}
DrawBox(wordprocessingGroup1, _canvasExtents, "000000", 1);
}
if (_options.ShowRingCentres)
{
ShowRingCentres(wordprocessingGroup1);
}
if (_options.ShowAtomPositions)
{
ShowAtomCentres(wordprocessingGroup1);
}
if (_options.ShowHulls)
{
ShowConvexHulls(wordprocessingGroup1);
}
#endregion Step 5a - Diagnostics
Debug.WriteLine($"{module} Starting Step 6");
//_telemetry.Write(module, "Verbose", "Starting Step 6");
#region Step 6 - Create and append OoXml objects for all Bond Lines
AppendBondOoxml(pb, wordprocessingGroup1);
#endregion Step 6 - Create and append OoXml objects for all Bond Lines
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", "Step 6 took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
Debug.WriteLine($"{module} Starting Step 7");
//_telemetry.Write(module, "Verbose", "Starting Step 7");
#region Step 7 - Create and append OoXml objects for Atom Labels
AppendAtomLabelOoxml(pb, wordprocessingGroup1);
#endregion Step 7 - Create and append OoXml objects for Atom Labels
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", "Step 7 took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
Debug.WriteLine($"{module} Starting Step 8");
//_telemetry.Write(module, "Verbose", "Starting Step 8");
#region Step 8 - Append OoXml drawing objects to OoXml run object
AppendAllOoXml(graphicData1, wordprocessingGroup1, graphic1, inline1, drawing1, run);
#endregion Step 8 - Append OoXml drawing objects to OoXml run object
Debug.WriteLine("Elapsed time " + sw.ElapsedMilliseconds.ToString("##,##0") + "ms");
//_telemetry.Write(module, "Timing", "Step 8 took " + sw.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
sw.Reset();
sw.Start();
double abl = _chemistryModel.MeanBondLength;
Debug.WriteLine("Elapsed time for GenerateRun " + swr.ElapsedMilliseconds.ToString("#,##0", CultureInfo.InvariantCulture) + "ms");
_telemetry.Write(module, "Timing", $"Rendering {_chemistryModel.Molecules.Count} molecules with {_chemistryModel.AllAtoms.Count} atoms and {_chemistryModel.AllBonds.Count} bonds took {swr.ElapsedMilliseconds.ToString("##,##0")} ms; Average Bond Length: {abl.ToString("#0.00")}");
ShutDownProgress(pb);
return(run);
}