Ejemplos de ICheckpointRunnerAsync en C# (CSharp)

Ejemplo n.º 1

        public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
        {
            CanvasRunner runner  = new CanvasRunner(logger, workManager, checkpointRunner, true, CanvasCoverageMode.GCContentWeighted, 100, CommonOptions.CustomParams);
            var          callset = GetCallset();

            runner.CallSample(callset);
        }

Ejemplo n.º 2

Archivo: GermlineWgsRunner.cs Proyecto: Illumina/canvas

 public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
 {
     CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, false, CanvasCoverageMode.TruncatedDynamicRange, 100, CommonOptions.CustomParams);
     var callset = GetCallset();
     logger.Info($"Normal Vcf path: {callset.NormalVcfPath}");
     runner.CallSample(callset);
 }

Ejemplo n.º 3

Archivo: SomaticEnrichmentRunner.cs Proyecto: jingquanlim/canvas

        public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
        {
            CanvasRunner runner  = new CanvasRunner(logger, workManager, checkpointRunner, true, CanvasCoverageMode.TruncatedDynamicRange, 300, CommonOptions.CustomParams);
            var          callset = GetCallset(logger);

            runner.CallSample(callset);
        }

Ejemplo n.º 4

        public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
        {
            CanvasRunner runner  = new CanvasRunner(logger, workManager, checkpointRunner, false, CanvasCoverageMode.TruncatedDynamicRange, 100, CommonOptions.CustomParams);
            var          callset = GetCallset();

            logger.Info($"Normal Vcf path: {callset.NormalVcfPath}");
            runner.CallSample(callset);
        }

Ejemplo n.º 5

Archivo: CanvasRunner.cs Proyecto: Illumina/canvas

 public CanvasRunner(ILogger logger, IWorkManager workManager, ICheckpointRunnerAsync checkpointRunner, bool isSomatic, CanvasCoverageMode coverageMode,
     int countsPerBin, Dictionary<string, string> customParameters = null)
 {
     _logger = logger;
     _workManager = workManager;
     _checkpointRunner = checkpointRunner;
     _isSomatic = isSomatic;
     _canvasFolder = Path.Combine(Utilities.GetAssemblyFolder(typeof(CanvasRunner)));
     _coverageMode = coverageMode;
     _countsPerBin = countsPerBin;
     if (customParameters != null)
     {
         _customParameters = new Dictionary<string, string>(customParameters, StringComparer.InvariantCultureIgnoreCase);
     }
 }

Ejemplo n.º 6

 public CanvasRunner(ILogger logger, IWorkManager workManager, ICheckpointRunnerAsync checkpointRunner, bool isSomatic, CanvasCoverageMode coverageMode,
                     int countsPerBin, Dictionary <string, string> customParameters = null)
 {
     _logger           = logger;
     _workManager      = workManager;
     _checkpointRunner = checkpointRunner;
     _isSomatic        = isSomatic;
     _canvasFolder     = Path.Combine(Utilities.GetAssemblyFolder(typeof(CanvasRunner)));
     _coverageMode     = coverageMode;
     _countsPerBin     = countsPerBin;
     if (customParameters != null)
     {
         _customParameters = new Dictionary <string, string>(customParameters, StringComparer.InvariantCultureIgnoreCase);
     }
 }

Ejemplo n.º 7

Archivo: SomaticEnrichmentRunner.cs Proyecto: Illumina/canvas

 public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
 {
     CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, true, CanvasCoverageMode.TruncatedDynamicRange, 300, CommonOptions.CustomParams);
     var callset = GetCallset(logger);
     runner.CallSample(callset);
 }

Ejemplo n.º 8

Archivo: TumorNormalWgsRunner.cs Proyecto: Illumina/canvas

 public void Run(ILogger logger, ICheckpointRunnerAsync checkpointRunner, IWorkManager workManager)
 {
     CanvasRunner runner = new CanvasRunner(logger, workManager, checkpointRunner, true, CanvasCoverageMode.GCContentWeighted, 100, CommonOptions.CustomParams);
     var callset = GetCallset();
     runner.CallSample(callset);
 }