private void CreateANormalCatalogue()
{
var svr = _database.Server;
using (var con = svr.GetConnection())
{
con.Open();
svr.GetCommand("CREATE TABLE NonTVFTable ( chi varchar(10))", con).ExecuteNonQuery();
svr.GetCommand("INSERT INTO NonTVFTable VALUES ('0101010101')", con).ExecuteNonQuery();
svr.GetCommand("INSERT INTO NonTVFTable VALUES ('0202020202')", con).ExecuteNonQuery();
svr.GetCommand("INSERT INTO NonTVFTable VALUES ('0303030303')", con).ExecuteNonQuery();
}
var importer = new TableInfoImporter(CatalogueRepository, svr.Name,
_database.GetRuntimeName(), "NonTVFTable",
DatabaseType.MicrosoftSQLServer, _database.Server.ExplicitUsernameIfAny, _database.Server.ExplicitPasswordIfAny);
importer.DoImport(out var tbl, out var cols);
var engineer = new ForwardEngineerCatalogue(tbl, cols, true);
engineer.ExecuteForwardEngineering(out var cata, out var cis, out var eis);
_nonTvfExtractionIdentifier = eis.Single();
_nonTvfExtractionIdentifier.IsExtractionIdentifier = true;
_nonTvfExtractionIdentifier.SaveToDatabase();
_nonTvfCatalogue = cata;
_nonTvfTableInfo = tbl;
}
/// <summary>
/// Tests that the logging database for the load is reachable and that it has an appropriate logging task for the load (if not a new task will be created 'Loading X')
/// </summary>
/// <param name="catalogue"></param>
public void EnsureLoggingWorksFor(ICatalogue catalogue)
{
//if there's no logging task / logging server set them up with the same name as the lmd
IExternalDatabaseServer loggingServer;
if (catalogue.LiveLoggingServer_ID == null)
{
loggingServer = CatalogueRepository.GetServerDefaults().GetDefaultFor(PermissableDefaults.LiveLoggingServer_ID);
if (loggingServer != null)
{
catalogue.LiveLoggingServer_ID = loggingServer.ID;
}
else
{
throw new NotSupportedException("You do not yet have any logging servers configured so cannot create data loads");
}
}
else
{
loggingServer = Repository.GetObjectByID <ExternalDatabaseServer>(catalogue.LiveLoggingServer_ID.Value);
}
//if there's no logging task yet and there's a logging server
if (string.IsNullOrWhiteSpace(catalogue.LoggingDataTask))
{
var lm = new LogManager(loggingServer);
var loggingTaskName = Name;
lm.CreateNewLoggingTaskIfNotExists(loggingTaskName);
catalogue.LoggingDataTask = loggingTaskName;
catalogue.SaveToDatabase();
}
}
public Form1(ICatalogue catalogue)
{
this.catalogue = catalogue;
InitializeComponent();
catalogue.CatalogueChanged += CatalogueOnCatalogueChanged;
UpdateProductList();
}
public CatalogueItem ShallowClone(ICatalogue into)
{
var clone = new CatalogueItem(CatalogueRepository, into, Name);
CopyShallowValuesTo(clone);
return(clone);
}
public void Add(ICatalogue catalogue)
{
foreach (var ei in catalogue.GetAllExtractionInformation(ExtractionCategory.Any))
{
Add(ei);
}
}
private void ConfigureAndExecutePipeline1OnPipelineExecutionFinishedsuccessfully(object sender, PipelineEngineEventArgs args)
{
//pipeline executed successfully
if (_alsoForwardEngineerCatalogue)
{
string targetTable = null;
try
{
var dest = (DataTableUploadDestination)args.PipelineEngine.DestinationObject;
targetTable = dest.TargetTableName;
var table = _database.ExpectTable(targetTable);
var ui = new ConfigureCatalogueExtractabilityUI(_activator, new TableInfoImporter(_repositoryLocator.CatalogueRepository, table), "File '" + _file.FullName + "'", _projectSpecific);
ui.ShowDialog();
var cata = CatalogueCreatedIfAny = ui.CatalogueCreatedIfAny;
if (cata != null)
{
MessageBox.Show("Catalogue " + cata.Name + " successfully created");
}
else
{
MessageBox.Show("User cancelled Catalogue creation, data has been loaded and TableInfo/ColumnInfos exist in Data Catalogue but there will be no Catalogue");
}
this.ParentForm.Close();
}
catch (Exception e)
{
ExceptionViewer.Show("Failed to import TableInfo/Forward Engineer Catalogue from " + _database.ToString() + "(Table was " + (targetTable ?? "Null!") + ")" + " - see Exception for details", e);
}
}
}
public Checkout(ICatalogue catalogue, IDiscounts discounts)
{
_subtotal = new Price();
_scannedItems = new Collection <IPurchaseable>();
_itemCatalogue = catalogue;
_discounts = discounts;
}
/// <summary>
/// Creates a new AggregateGraph for the given dataset (<paramref name="cata"/>)
/// </summary>
/// <param name="cata"></param>
/// <param name="name">The name to give the graph</param>
/// <param name="dimension1">The first dimension e.g. pass only one dimension to create a bar chart</param>
/// <param name="isAxis">True if <paramref name="dimension1"/> should be created as a axis (creates a line chart)</param>
/// <param name="dimension2">Optional second dimension to create (this will be the pivot column)</param>
private AggregateConfiguration CreateGraph(ICatalogue cata, string name, string dimension1, bool isAxis, string dimension2)
{
var ac = new AggregateConfiguration(_repos.CatalogueRepository, cata, name);
ac.CountSQL = "count(*) as NumberOfRecords";
ac.SaveToDatabase();
ac.IsExtractable = true;
var mainDimension = ac.AddDimension(GetExtractionInformation(cata, dimension1));
var otherDimension = string.IsNullOrWhiteSpace(dimension2) ? null : ac.AddDimension(GetExtractionInformation(cata, dimension2));
if (isAxis)
{
var axis = new AggregateContinuousDateAxis(_repos.CatalogueRepository, mainDimension);
axis.StartDate = "'1970-01-01'";
axis.AxisIncrement = FAnsi.Discovery.QuerySyntax.Aggregation.AxisIncrement.Year;
axis.SaveToDatabase();
}
if (otherDimension != null)
{
ac.PivotOnDimensionID = otherDimension.ID;
ac.SaveToDatabase();
}
return(ac);
}
private void ForExtractionInformations(ICatalogue catalogue, Action <ExtractionInformation> action, params string[] extractionInformations)
{
foreach (var e in extractionInformations.Select(s => GetExtractionInformation(catalogue, s)))
{
action(e);
}
}
private IColumn GetExtractionIdentifierFrom(ICatalogue catalogue, ChooseWhichExtractionIdentifierToUseFromManyHandler resolveMultipleExtractionIdentifiers)
{
//the aggregate they are cloning does not have an extraction identifier but the dataset might still have one
var catalogueCandidates = catalogue.GetAllExtractionInformation(ExtractionCategory.Any).Where(e => e.IsExtractionIdentifier).ToArray();
//if there are multiple IsExtractionInformation columns
if (catalogueCandidates.Count() != 1)
{
if (resolveMultipleExtractionIdentifiers == null)//no delegate has been provided for resolving this
{
throw new NotSupportedException("Cannot create AggregateConfiguration because the Catalogue " + catalogue + " has " + catalogueCandidates.Length + " IsExtractionIdentifier ExtractionInformations");
}
else
{
//there is a delegate to resolve this, invoke it
var answer = resolveMultipleExtractionIdentifiers(catalogue, catalogueCandidates);
//the delegate returned null
if (answer == null)
{
throw new Exception("User did not pick a candidate ExtractionInformation column from those we offered");
}
else
{
return(answer);//the delegate picked one
}
}
}
return(catalogueCandidates[0]);
}
/// <summary>
/// Creates a new cohort set <see cref="AggregateConfiguration"/> which initially matches any patient appearing in the dataset (<see cref="Catalogue"/>).
/// <para>IMPORTANT: It must be possible to select a single column from which to harvest the patient identifiers from <paramref name="resolveMultipleExtractionIdentifiers"/></para>
/// </summary>
/// <param name="catalogue">The catalogue to import as a patient identification set (you can import the same Catalogue multiple times e.g.
/// 'People ever prescribed morphine' EXCEPT 'People ever prescribed percoset'</param>
/// <param name="resolveMultipleExtractionIdentifiers">What to do if there are multiple <see cref="ExtractionInformation"/>
/// marked IsExtractionIdentifier</param>
/// <param name="importMandatoryFilters"></param>
/// <returns></returns>
public AggregateConfiguration CreateNewEmptyConfigurationForCatalogue(ICatalogue catalogue, ChooseWhichExtractionIdentifierToUseFromManyHandler resolveMultipleExtractionIdentifiers, bool importMandatoryFilters = true)
{
var cataRepo = (ICatalogueRepository)Repository;
AggregateConfiguration configuration = new AggregateConfiguration(cataRepo, catalogue, "People in " + catalogue);
EnsureNamingConvention(configuration);
if (!catalogue.IsApiCall())
{
var extractionIdentifier = (ExtractionInformation)GetExtractionIdentifierFrom(catalogue, resolveMultipleExtractionIdentifiers);
//make the extraction identifier column into the sole dimension on the new configuration
new AggregateDimension(cataRepo, extractionIdentifier, configuration);
}
//no count sql
configuration.CountSQL = null;
configuration.SaveToDatabase();
if (importMandatoryFilters)
{
ImportMandatoryFilters(catalogue, configuration, GetAllParameters());
}
return(configuration);
}
public void CommitToDatabase(Evaluation evaluation, ICatalogue catalogue, DbConnection con, DbTransaction transaction)
{
if (!_correctValuesCalculated)
{
throw new Exception("You must call CalculateFinalValues before committing to the database");
}
IEnumerable <int> novelDataLoadRunIDs = RowsPassingValidationByDataLoadRunID.Keys;
//now for every load batch we encountered in our evaluations
foreach (int dataLoadRunID in novelDataLoadRunIDs)
{
//record the row states calculation (how many total rows are good/bad/ugly etc)
evaluation.AddRowState(dataLoadRunID,
RowsPassingValidationByDataLoadRunID[dataLoadRunID],
WorstConsequencesByDataLoadRunID[dataLoadRunID][Consequence.Missing],
WorstConsequencesByDataLoadRunID[dataLoadRunID][Consequence.Wrong],
WorstConsequencesByDataLoadRunID[dataLoadRunID][Consequence.InvalidatesRow],
catalogue.ValidatorXML,
_pivotCategory,
con,
transaction
);
//record the column states calculations (how many total values in column x are good/bad/ugly etc)
foreach (var columnState in AllColumnStates[dataLoadRunID])
{
columnState.Commit(evaluation, _pivotCategory, con, transaction);
}
}
}
/// <summary>
/// Creates a new supporting document for helping understand the dataset <paramref name="parent"/>
/// </summary>
/// <param name="repository"></param>
/// <param name="parent"></param>
/// <param name="name"></param>
public SupportingDocument(ICatalogueRepository repository, ICatalogue parent, string name)
{
repository.InsertAndHydrate(this, new Dictionary <string, object>
{
{ "Name", name },
{ "Catalogue_ID", parent.ID }
});
}
/// <summary>
/// Creates a new folder that the Catalogue should now reside in.
/// <para><remarks>After calling this you should use <code>parent.Folder = instance; parent.SaveToDatabase();</code></remarks></para>
/// </summary>
/// <param name="parent"></param>
/// <param name="folder"></param>
public CatalogueFolder(ICatalogue parent, string folder)
{
//always Lower everything!
folder = folder.ToLower();
_parent = parent;
Path = folder;
}
/// <inheritdoc/>
public bool HasEvaluations(ICatalogue catalogue)
{
using (var con = GetConnection())
{
//get all the row level data 1 to 1 join with evaluation
using (var cmdGetEvaluations = DatabaseCommandHelper.GetCommand("select count(*) from Evaluation where CatalogueID = " + catalogue.ID, con.Connection, con.Transaction))
return(Convert.ToInt32(cmdGetEvaluations.ExecuteScalar()) > 0);
}
}
private string GetSql(ICatalogue mainCata)
{
mainCata.ClearAllInjections();
var qb = new QueryBuilder(null, null);
qb.AddColumnRange(mainCata.GetAllExtractionInformation(ExtractionCategory.Any));
return(qb.SQL);
}
public ForwardEngineerANOCataloguePlanManager(IRDMPPlatformRepositoryServiceLocator repositoryLocator, ICatalogue catalogue) : this(repositoryLocator)
{
Catalogue = catalogue;
foreach (var plan in Plans.Values)
{
plan.SetToRecommendedPlan();
}
}
private void ConfigureCatalogueExtractabilityUI_FormClosing(object sender, FormClosingEventArgs e)
{
if (!_choicesFinalised)
{
if (_importedNewTable)
{
var confirm = MessageBox.Show("The database table was created as part of this import. Do you want to keep that?",
"Confirm", MessageBoxButtons.YesNoCancel);
if (confirm != DialogResult.Cancel)
{
DialogResult = DialogResult.Cancel;
_catalogue.DeleteInDatabase();
_catalogue = null;
if (confirm == DialogResult.No)
{
_tableInfo.DeleteInDatabase();
_tableInfo = null;
if (TableCreated != null && TableCreated.Exists())
{
TableCreated.Drop();
}
}
else
{
Activator.Publish(TableInfoCreated);
}
}
else
{
e.Cancel = true;
}
}
else
{
if (MessageBox.Show(
"Are you sure you want to Cancel?",
"Confirm", MessageBoxButtons.YesNo) == DialogResult.Yes)
{
DialogResult = DialogResult.Cancel;
_catalogue.DeleteInDatabase();
_catalogue = null;
}
else
{
e.Cancel = true;
}
}
}
else
{
if (CatalogueCreatedIfAny != null)
{
Activator.Publish(CatalogueCreatedIfAny);
}
}
}
public virtual bool CatalogueSupportsReport(ICatalogue c)
{
_catalogue = c;
ToMemoryCheckNotifier checkNotifier = new ToMemoryCheckNotifier();
Check(checkNotifier);
return(checkNotifier.GetWorst() <= CheckResult.Warning);
}
public static Catalogue Create(ICatalogue catalogue)
{
return(new Catalogue()
{
CODE = catalogue.CODE,
Name = catalogue.Name,
Description = catalogue.Description,
Tags = new Dictionary <string, string>(catalogue.Tags),
});
}
/// <inheritdoc/>
public override void DeleteInDatabase()
{
ICatalogue firstOrDefault = GetAllCatalogues().FirstOrDefault();
if (firstOrDefault != null)
{
throw new Exception("This load is used by " + firstOrDefault.Name + " so cannot be deleted (Disassociate it first)");
}
base.DeleteInDatabase();
}
private ExtractionInformation GetExtractionInformation(ICatalogue cata, string name)
{
try
{
return(cata.GetAllExtractionInformation(ExtractionCategory.Any).Single(ei => ei.GetRuntimeName().Equals(name, StringComparison.CurrentCultureIgnoreCase)));
}
catch
{
throw new Exception("Could not find an ExtractionInformation called '" + name + "' in dataset " + cata.Name);
}
}
public CatalogueExtractabilityStatus GetExtractabilityStatus(ICatalogue c)
{
var eds = GetAllObjectsWithParent <ExtractableDataSet>(c).SingleOrDefault();
if (eds == null)
{
return(new CatalogueExtractabilityStatus(false, false));
}
return(new CatalogueExtractabilityStatus(true, eds.Project_ID != null));
}
public DataLoadProgressUpdateInfoTests()
{
ICatalogue cata = Mock.Of <ICatalogue>(
c => c.LoggingDataTask == "NothingTask" &&
c.GetTableInfoList(false) == new TableInfo[0] &&
c.GetLookupTableInfoList() == new TableInfo[0]);
var lmd = Mock.Of <ILoadMetadata>(m => m.GetAllCatalogues() == new[] { cata });
_job = new ScheduledDataLoadJob(null, "fish", Mock.Of <ILogManager>(), lmd, null, new ThrowImmediatelyDataLoadJob(), null);
}
/// <summary>
/// Creates a new virtual column description for for a column in the dataset (<paramref name="parent"/>) supplied with the given Name.
/// <para><remarks>You should next choose which <see cref="ColumnInfo"/> powers it and optionally create an <see cref="ExtractionInformation"/> to
/// make the column extractable</remarks></para>
/// </summary>
public CatalogueItem(ICatalogueRepository repository, ICatalogue parent, string name)
{
repository.InsertAndHydrate(this, new Dictionary <string, object>
{
{ "Name", name },
{ "Catalogue_ID", parent.ID }
});
ClearAllInjections();
parent.ClearAllInjections();
}
/// <summary>
/// Starts a new evaluation with the given transaction
/// </summary>
internal Evaluation(DQERepository dqeRepository, ICatalogue c)
{
DQERepository = dqeRepository;
Catalogue = c;
dqeRepository.InsertAndHydrate(this,
new Dictionary <string, object>()
{
{ "CatalogueID", c.ID },
{ "DateOfEvaluation", DateTime.Now }
});
}
public ExecuteCommandAddTag(BasicActivateItems activator, ICatalogue catalogue,
[DemandsInitialization("Name of the new column you want created.")]
string column,
[DemandsInitialization("Optional when column is the name of a Dicom Tag e.g. StudyInstanceUID")]
string dataType) : base(activator)
{
var tables = catalogue.GetTableInfosIdeallyJustFromMainTables();
if (tables.Length != 1)
{
SetImpossible($"There are {tables.Length} tables mapped under Catalogue {catalogue}");
return;
}
if (string.IsNullOrWhiteSpace(column))
{
SetImpossible("Column name must be supplied");
return;
}
var syntax = tables[0].GetQuerySyntaxHelper();
//if user hasn't listed a specific datatype, guess it from the column
if (string.IsNullOrWhiteSpace(dataType))
{
var available = TagColumnAdder.GetAvailableTags();
if (!available.Contains(column))
{
var similar = available.Where(c => c.Contains(column)).ToArray();
if (similar.Any())
{
SetImpossible($"Could not find a tag called '{column}'. Possibly you meant:" + Environment.NewLine + string.Join(Environment.NewLine, similar));
return;
}
SetImpossible($"Could not find a tag called '{column}' or any like it");
return;
}
try
{
dataType = TagColumnAdder.GetDataTypeForTag(column, syntax.TypeTranslater);
}
catch (Exception e)
{
throw new Exception("No dataType was specified and column name could not be resolved to a DicomTag", e);
}
}
_adder = new TagColumnAdder(column, dataType, (TableInfo)tables[0], new AcceptAllCheckNotifier());
}
public ExecuteCommandImportFilterContainerTree(IBasicActivateItems activator, IRootFilterContainerHost into) : this(activator)
{
_into = into;
if (into.RootFilterContainer_ID != null)
{
SetImpossible("Dataset already has a root container");
}
_catalogue = _into.GetCatalogue();
}
/// <summary>
/// Change which column is the linkage identifier in a <see cref="Catalogue"/> either at a global level or for a specific <paramref name="inConfiguration"/>
/// </summary>
/// <param name="activator"></param>
/// <param name="catalogue"></param>
/// <param name="inConfiguration"></param>
/// <param name="column"></param>
public ExecuteCommandSetExtractionIdentifier(IBasicActivateItems activator,
[DemandsInitialization("The dataset you want to change the extraction identifier for")]
ICatalogue catalogue,
[DemandsInitialization("Optional - The specific extraction you want the change made in or Null for the Catalogue itself (will affect all future extractions)")]
IExtractionConfiguration inConfiguration,
[DemandsInitialization("Optional - The Column name(s) you want to select as the new linkage identifier(s). Comma seperate multiple entries if needed")]
string column) : base(activator)
{
_catalogue = catalogue;
_inConfiguration = inConfiguration;
_catalogue.ClearAllInjections();
if (inConfiguration != null)
{
var allEds = inConfiguration.GetAllExtractableDataSets();
var eds = allEds.FirstOrDefault(sds => sds.Catalogue_ID == _catalogue.ID);
if (eds == null)
{
SetImpossible($"Catalogue '{_catalogue}' is not part of ExtractionConfiguration '{inConfiguration}'");
return;
}
_selectedDataSetColumns = inConfiguration.GetAllExtractableColumnsFor(eds);
if (_selectedDataSetColumns.Length == 0)
{
SetImpossible($"Catalogue '{_catalogue}' in '{inConfiguration}' does not have any extractable columns");
return;
}
_alreadyMarkedInConfiguration = _selectedDataSetColumns.Where(ei => ei.IsExtractionIdentifier).ToArray();
}
else
{
_extractionInformations = _catalogue.GetAllExtractionInformation(ExtractionCategory.Any);
if (_extractionInformations.Length == 0)
{
SetImpossible("Catalogue does not have any extractable columns");
return;
}
_alreadyMarked = _extractionInformations.Where(ei => ei.IsExtractionIdentifier).ToArray();
}
if (!string.IsNullOrWhiteSpace(column))
{
toPick = column.Split(',', StringSplitOptions.RemoveEmptyEntries);
}
}
private ExtractionInformation GetExtractionInformationFromCatalogue(ICatalogue catalogue)
{
var eis = catalogue.GetAllExtractionInformation(ExtractionCategory.Any);
if (eis.Count(ei => ei.IsExtractionIdentifier) != 1)
{
SetImpossible("Catalogue must have a single IsExtractionIdentifier column");
return null;
}
return eis.Single(e => e.IsExtractionIdentifier);
}
public CatalogueLogic(string assemblyName)
{
var collectionFactory = new CollectionFactory(assemblyName);
_catalogueSite = collectionFactory.CreateCatalogueSecretary();
}
