public string GetAnalysisQueryOutput(Guid analysisId, string queryId, string filename)
{
var entity = _tableStorageProvider.GetEntity <AnalysisEntity>(AnalysisEntity.AllUsersPk, analysisId.ToString());
if (entity == null)
{
throw new Exception("No such analysis " + analysisId);
}
var blobs = _blobStorageProvider.ListBlobs(entity.OutputContainer);
var blob = blobs.FirstOrDefault(b => b.BlobName == filename);
if (blob == null)
{
throw new Exception("No such query output " + filename);
}
return(_blobStorageProvider.GetBlobAsText(entity.OutputContainer, blob.BlobName));
}
public string GetSearchQueryOutput(Guid searchId, string queryId, string filename)
{
var entity = _tableStorageProvider.GetEntity <SearchEntity>(SearchEntity.AllUsersPk, searchId.ToString());
if (entity == null)
{
throw new Exception("No such search " + searchId);
}
var blobs = _blobStorageProvider.ListBlobs(entity.OutputContainer);
var blob = blobs.FirstOrDefault(b => b.BlobName.EndsWith(filename));
if (blob == null)
{
throw new Exception("No such query output " + filename);
}
return(_blobStorageProvider.GetBlobAsText(entity.OutputContainer, blob.BlobName));
}
private DatabaseEntity GetDatabase(string databaseName, IEnumerable <Blob> databaseBlobs)
{
var aliasBlobName = GetDatabaseAliasBlobs(databaseBlobs).FirstOrDefault();
if (aliasBlobName != null)
{
var content = _blobStorageProvider.GetBlobAsText(_databaseContainerName, aliasBlobName);
if (!string.IsNullOrEmpty(content))
{
var alias = DatabaseAlias.FromContent(content);
if (!string.IsNullOrEmpty(alias.Title) && alias.Length > 0 && alias.DatabaseList != null)
{
return(GetDatabaseFromAliasBlob(databaseName, alias, aliasBlobName, databaseBlobs));
}
}
}
// Create a db fragment for each file in the segment, e.g. nt.00.nhd, nt.00.nhi,
// nt.00.nhr, etc.
var segmentFragments =
databaseBlobs.Select(
blob =>
new DatabaseFragment(blob.BlobName, blob.Length));
var fragments = new List <DatabaseFragment>(segmentFragments);
if (fragments.Any())
{
var type = Path.GetExtension(databaseBlobs.First().BlobName).StartsWith("n")
? DatabaseType.Nucleotide
: DatabaseType.Protein;
var length =
fragments.Where(frag => !frag.Filename.EndsWith(".nal") && !frag.Filename.EndsWith(".pal"))
.Sum(frag => frag.Size);
return(new DatabaseEntity(databaseName, ContainerName, fragments.Count, length, DatabaseState.Ready, type));
}
return(null);
}