static void Main(string[] args)
{
Parser.Default.ParseArguments <CommandLineOptions>(args)
.WithParsed <CommandLineOptions>(opts =>
{
foreach (var file in Directory.GetFiles(opts.Path, "*.RAW", SearchOption.TopDirectoryOnly))
{
string simpleFileName = Path.GetFileNameWithoutExtension(file);
Console.WriteLine(simpleFileName);
using (RawFileReader reader = new RawFileReader(file))
{
IAverager averager = reader.GetRawAverager();
System.Collections.Generic.IEnumerable <int> scanList = Enumerable.Range(opts.StartScan, opts.EndScan);
IProfileSpectrum avg = averager.AverageProfile(reader, scanList);
var masses = avg.GetMz();
var intensities = avg.GetIntensity();
var csv = new StringBuilder();
for (var i = 0; i < masses.Length; i++)
{
var newLine = string.Format("{0},{1}", masses[i], intensities[i]);
csv.AppendLine(newLine);
}
var filePath = Path.ChangeExtension(file, ".csv");
File.WriteAllText(filePath, csv.ToString());
}
}
});
}
public double CalculateAverage(List <double> values, IAverager averager)
{
if (values == null)
{
throw new ArgumentNullException(nameof(values));
}
return(averager.Transform(values));
}
