internal static ArrayList run(IList para)
{
bool reverse = false;
modshogun.init_shogun_with_defaults();
int order = (int)((int?)para[0]);
int gap = (int)((int?)para[1]);
string[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat");
StringCharFeatures charfeat = new StringCharFeatures(fm_train_dna, DNA);
StringWordFeatures feats = new StringWordFeatures(charfeat.get_alphabet());
feats.obtain_from_char(charfeat, order-1, order, gap, reverse);
Histogram histo = new Histogram(feats);
histo.train();
histo.get_histogram();
int num_examples = feats.get_num_vectors();
int num_param = histo.get_num_model_parameters();
DoubleMatrix out_likelihood = histo.get_log_likelihood();
double out_sample = histo.get_log_likelihood_sample();
ArrayList result = new ArrayList();
result.Add(histo);
result.Add(out_sample);
result.Add(out_likelihood);
modshogun.exit_shogun();
return result;
}