private static void WriteAttribute(H5ObjectWithAttributes target, string name, string value)
{
if (string.IsNullOrEmpty(name))
{
throw new ArgumentException("Name must not be empty (or null)", "name");
}
if (string.IsNullOrEmpty(value))
{
throw new ArgumentException("Value must not be empty or null", "value");
}
H5DataTypeId dtype;
byte[] strdata = EncodeStringData(value, out dtype);
H5DataSpaceId spaceId = H5S.create(H5S.H5SClass.SCALAR);
H5AttributeId attributeId = H5A.create(target, name, dtype, spaceId);
H5A.write(attributeId, dtype, new H5Array <byte>(strdata));
H5A.close(attributeId);
H5T.close(dtype);
H5S.close(spaceId);
}
private bool setOMXFileAttributes()
{
// write OMX attributes
H5DataSpaceId dspace;
H5DataTypeId dtype;
H5AttributeId attr;
// OMX version
dspace = H5S.create(H5S.H5SClass.SCALAR);
dtype = H5T.copy(H5T.H5Type.C_S1); // string datatype
H5T.setSize(dtype, dllVersion[0].Length);
attr = H5A.create(fileId, omxVersionName, dtype, dspace);
ASCIIEncoding ascii = new ASCIIEncoding();
H5A.write(attr, dtype, new H5Array <System.Byte>(ascii.GetBytes(dllVersion[0])));
H5A.close(attr);
// OMX shape - only 2D tables
dspace = H5S.create_simple(1, new long[] { 2 });
dtype = H5T.copy(H5T.H5Type.NATIVE_INT);
attr = H5A.create(fileId, omxShapeAttr, dtype, dspace);
int[] shape = new int[2];
shape[0] = (int)Shape[0];
shape[1] = (int)Shape[1];
H5A.write <int>(attr, dtype, new H5Array <int>(shape));
H5S.close(dspace);
H5A.close(attr);
return(true);
}
/// <summary>
/// 写数据集属性
/// </summary>
public void WriteDatasetAttribute(string datasetName, string attrName, string value)
{
H5DataSetId datasetId = H5D.open(_fileId, datasetName);
H5DataTypeId typeId = H5T.copy(H5T.H5Type.C_S1);
H5DataSpaceId spaceId = H5S.create(H5S.H5SClass.SCALAR);
H5T.setSize(typeId, value.Length);
H5AttributeId attrId = H5A.create(datasetId, attrName, typeId, spaceId);
if (value != "")
{
H5Array <byte> buffer = new H5Array <byte>(Encoding.Default.GetBytes(value));
H5A.write(attrId, typeId, buffer);
}
if (typeId != null)
{
H5T.close(typeId);
}
if (spaceId != null)
{
H5S.close(spaceId);
}
if (attrId != null)
{
H5A.close(attrId);
}
if (datasetId != null)
{
H5D.close(datasetId);
}
}
public static unsafe void AddDataspaceNull(long fileId, ContainerType container)
{
var spaceId = H5S.create(H5S.class_t.NULL);
TestUtils.Add(container, fileId, "dataspace", "null", H5T.NATIVE_DOUBLE, null, spaceId);
H5S.close(spaceId);
}
private static void WriteFile(string filePath)
{
var file = H5F.create(filePath, H5F.CreateMode.ACC_TRUNC);
var group = H5G.create(file, "/group");
H5G.close(group);
const int RANK = 2;
const int DIM0 = 3;
const int DIM1 = 4;
var dims = new long[RANK] {
DIM0, DIM1
};
var dataSpace = H5S.create_simple(RANK, dims);
var dataSet = H5D.create(file, "/group/dataset", H5T.H5Type.NATIVE_INT, dataSpace);
H5S.close(dataSpace);
var data = new int[DIM0, DIM1]
{
{ 1, 2, 3, 4 },
{ 5, 6, 7, 8 },
{ 9, 10, 11, 12 }
};
H5D.write(dataSet, new H5DataTypeId(H5T.H5Type.NATIVE_INT), new H5Array <int>(data));
var dataType = new H5DataTypeId(H5T.H5Type.NATIVE_INT);
dataSpace = H5S.create(H5S.H5SClass.SCALAR);
var integerAttribute = H5A.create(dataSet, "int", dataType, dataSpace);
H5A.write(integerAttribute, dataType, new H5Array <int>(new int[1] {
42
}));
H5A.close(integerAttribute);
H5S.close(dataSpace);
//H5T.close(dataType); // Read-only.
var str = "Hello, world!";
var strBytes = Encoding.ASCII.GetBytes(str);
// There is a H5T.get_cset, but there does not seem to be a way of setting the character encoding, i.e. set_cset.
dataType = H5T.copy(H5T.H5Type.C_S1);
H5T.setSize(dataType, strBytes.Length);
dataSpace = H5S.create(H5S.H5SClass.SCALAR);
var stringAttribute = H5A.create(dataSet, "string", dataType, dataSpace);
H5A.write(stringAttribute, dataType, new H5Array <byte>(strBytes));
H5A.close(stringAttribute);
H5S.close(dataSpace);
H5T.close(dataType);
H5D.close(dataSet);
H5F.close(file);
}
public void H5OcloseTest4()
{
hid_t space = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(space >= 0);
Assert.IsTrue(H5O.close(space) < 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public void H5Sis_simpleTest3()
{
hid_t space = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(space >= 0);
Assert.IsTrue(H5S.is_simple(space) > 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public void H5Sget_simple_extent_npointsTest2()
{
hid_t space = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(space >= 0);
Assert.IsTrue(H5S.get_simple_extent_npoints(space) == 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public void H5Sget_simple_extent_ndimsTest3()
{
hid_t space = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(space >= 0);
Assert.IsTrue(H5S.get_simple_extent_ndims(space) == 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public void H5Sis_simpleTest2()
{
hid_t space = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(space >= 0);
Assert.IsTrue(H5S.is_simple(space) == 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public void H5Sselect_noneTest3()
{
hid_t space = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(space > 0);
Assert.IsTrue(H5S.select_none(space) >= 0);
Assert.IsTrue(H5S.get_select_npoints(space) == 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public void H5Sselect_allTest4()
{
hid_t space = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(space > 0);
Assert.IsTrue(H5S.select_all(space) >= 0);
Assert.IsTrue(H5S.get_select_npoints(space) == 1);
Assert.IsTrue(H5S.close(space) >= 0);
}
public static bool WriteScalarNumericAttribute <T>(hid_t hid, string key, T value, hid_t type) where T : struct
{
if (key == null)
{
throw new ArgumentNullException("key");
}
var exists = H5A.exists(hid, key);
if (exists < 0)
{
throw new Exception("H5A.exists failed");
}
if (exists == 0)
{
var space = H5S.create(H5S.class_t.SCALAR);
if (space < 0)
{
throw new Exception("Failed to create scalar space");
}
var attribute = H5A.create(hid, key, type, space);
if (attribute < 0)
{
H5S.close(space);
throw new Exception(string.Format("Failed to create attribute \"{0}\"", key));
}
H5S.close(space);
object boxedValue = value;
H5A.write(attribute, type, new PinnedObject(boxedValue));
H5A.close(attribute);
return(true);
}
else
{
var attribute = H5A.open(hid, key);
if (attribute < 0)
{
throw new Exception(string.Format("Failed to open attribute \"{0}\"", key));
}
try
{
return(WriteScalarNumericAttribute(attribute, value, type));
}
finally
{
H5A.close(attribute);
}
}
}
public static bool WriteFixedStringAttribute(hid_t hid, string key, string value, bool utf8)
{
var exists = H5A.exists(hid, key);
if (exists < 0)
{
throw new Exception("H5A.exists failed");
}
if (exists == 0) // Attribute doesn't exist
{
var bytes = value.ToBytes(utf8);
var type = CreateFixedStringType(bytes, utf8);
var space = H5S.create(H5S.class_t.SCALAR);
if (space < 0)
{
H5T.close(type);
throw new Exception("Failed to create scalar space");
}
var attribute = H5A.create(hid, key, type, space);
if (attribute < 0)
{
H5S.close(space);
H5T.close(type);
throw new Exception(string.Format("Failed to create attribute \"{0}\"", key));
}
H5A.write(attribute, type, new PinnedObject(bytes));
H5A.close(attribute);
H5S.close(space);
H5T.close(type);
return(true);
}
else
{
var attribute = H5A.open(hid, key);
if (attribute < 0)
{
throw new Exception(string.Format("Failed to open attribute \"{0}\"", key));
}
try
{
return(WriteFixedStringAttribute(attribute, value, utf8));
}
finally
{
H5A.close(attribute);
}
}
}
public void H5Sset_extent_simpleTest1()
{
hid_t space = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(space > 0);
hsize_t[] dims = { 10, 20, 30 };
Assert.IsTrue(
H5S.set_extent_simple(space, 3, dims, null) >= 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public static unsafe void AddDataspaceScalar(long fileId, ContainerType container)
{
var spaceId = H5S.create(H5S.class_t.SCALAR);
var data = new double[] { -1.2234234e-3 };
fixed(void *dataPtr = data)
{
TestUtils.Add(container, fileId, "dataspace", "scalar", H5T.NATIVE_DOUBLE, dataPtr, spaceId);
}
H5S.close(spaceId);
}
private void AttributeCreateProcedure()
{
string name = Thread.CurrentThread.Name;
hid_t space = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(space >= 0);
Assert.IsTrue(
H5A.close(H5A.create(m_shared_file_id, name, H5T.STD_I32BE,
space)) >= 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
private static void WriteAttribute(H5ObjectWithAttributes target, string name, long value)
{
H5DataTypeId dtype = H5T.copy(H5T.H5Type.NATIVE_LLONG);
H5DataSpaceId spaceId = H5S.create(H5S.H5SClass.SCALAR);
H5AttributeId attributeId = H5A.create(target, name, dtype, spaceId);
H5A.write(attributeId, dtype, new H5Array <long>(new[] { value }));
H5A.close(attributeId);
H5T.close(dtype);
H5S.close(spaceId);
}
public void H5Sextent_copyTest1()
{
hsize_t[] dims = { 1, 2, 3 };
hid_t space = H5S.create_simple(dims.Length, dims, dims);
Assert.IsTrue(space > 0);
hid_t space1 = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(space1 > 0);
Assert.IsTrue(H5S.extent_copy(space1, space) >= 0);
Assert.IsTrue(H5S.is_simple(space1) > 0);
Assert.IsTrue(H5S.close(space1) >= 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
private void DatasetCreateProcedure()
{
string name = Thread.CurrentThread.Name;
hid_t space = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(space >= 0);
hid_t dset = H5D.create(m_shared_file_id, name, H5T.STD_I32BE,
space);
Assert.IsTrue(dset >= 0);
Assert.IsTrue(H5D.close(dset) >= 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public void H5ScreateTest1()
{
hid_t space = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(space > 0);
Assert.IsTrue(H5S.close(space) >= 0);
space = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(space > 0);
Assert.IsTrue(H5S.close(space) >= 0);
space = H5S.create(H5S.class_t.SIMPLE);
Assert.IsTrue(space > 0);
Assert.IsTrue(H5S.close(space) >= 0);
}
public static int WriteAsciiString(hid_t groupId, string name, string str)
{
var spaceNullId = H5S.create(H5S.class_t.NULL);
var spaceScalarId = H5S.create(H5S.class_t.SCALAR);
// create two datasets of the extended ASCII character set
// store as H5T.FORTRAN_S1 -> space padding
int strLength = str.Length;
ulong[] dims = { (ulong)strLength, 1 };
/* Create the dataset. */
//name = ToHdf5Name(name);
var spaceId = H5S.create_simple(1, dims, null);
var datasetId = H5D.create(groupId, name,
H5T.FORTRAN_S1, spaceId);
H5S.close(spaceId);
// we write from C and must provide null-terminated strings
byte[] wdata = new byte[strLength * 2];
//for (int i = 0; i < strLength; ++i)
//{
// wdata[2 * i] = (byte)i;
//}
for (int i = 0; i < strLength; ++i)
{
wdata[2 * i] = Convert.ToByte(str[i]);
}
var memId = H5T.copy(H5T.C_S1);
H5T.set_size(memId, new IntPtr(2));
//H5T.set_strpad(memId, H5T.str_t.NULLTERM);
GCHandle hnd = GCHandle.Alloc(wdata, GCHandleType.Pinned);
int result = H5D.write(datasetId, memId, H5S.ALL,
H5S.ALL, H5P.DEFAULT, hnd.AddrOfPinnedObject());
hnd.Free();
H5T.close(memId);
H5D.close(datasetId);
return(result);
}
static void WriteFile(string filePath)
{
var file = H5F.create(filePath, H5F.ACC_TRUNC);
var group = H5G.create(file, "/group");
H5G.close(group);
const int RANK = 2;
const int DIM0 = 3;
const int DIM1 = 4;
var dims = new ulong[RANK] {
DIM0, DIM1
};
var dataSpace = H5S.create_simple(RANK, dims, null);
var dataSet = H5D.create(file, "/group/dataset", H5T.NATIVE_INT, dataSpace);
H5S.close(dataSpace);
var data = new int[DIM0, DIM1]
{
{ 1, 2, 3, 4 },
{ 5, 6, 7, 8 },
{ 9, 10, 11, 12 }
};
H5D.write(dataSet, H5T.NATIVE_INT, H5S.ALL, H5S.ALL, H5P.DEFAULT, new PinnedObject(data));
var hello = "早上好！";
WriteStringAttribute(dataSet, "string", hello, true, false);
WriteStringAttribute(dataSet, "string-ascii", "Hello, world!", false, false);
WriteStringAttribute(dataSet, "string-vlen", hello, true, true);
dataSpace = H5S.create(H5S.class_t.SCALAR);
var doubleAttribute = H5A.create(dataSet, "double", H5T.NATIVE_DOUBLE, dataSpace);
H5S.close(dataSpace);
H5A.write(doubleAttribute, H5T.NATIVE_DOUBLE, new PinnedObject(new double[] { Math.PI }));
H5A.close(doubleAttribute);
H5D.close(dataSet);
H5F.close(file);
}
public static void ClassInit(TestContext testContext)
{
// create test files which persists across file tests
m_v0_class_file = Utilities.H5TempFile(ref m_v0_class_file_name,
H5F.libver_t.EARLIEST);
Assert.IsTrue(m_v0_class_file >= 0);
m_v2_class_file = Utilities.H5TempFile(ref m_v2_class_file_name);
Assert.IsTrue(m_v2_class_file >= 0);
m_space_null = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(m_space_null >= 0);
m_space_scalar = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(m_space_scalar >= 0);
m_acpl = H5P.create(H5P.ATTRIBUTE_CREATE);
Assert.IsTrue(m_acpl >= 0);
Assert.IsTrue(H5P.set_char_encoding(m_acpl, H5T.cset_t.UTF8) >= 0);
}
public static int WriteUnicodeString(hid_t groupId, string name, string str, H5T.str_t strPad = H5T.str_t.SPACEPAD)
{
byte[] wdata = Encoding.UTF8.GetBytes(str);
hid_t spaceId = H5S.create(H5S.class_t.SCALAR);
hid_t dtype = H5T.create(H5T.class_t.STRING, new IntPtr(wdata.Length));
H5T.set_cset(dtype, H5T.cset_t.UTF8);
H5T.set_strpad(dtype, strPad);
hid_t datasetId = H5D.create(groupId, name, dtype, spaceId);
GCHandle hnd = GCHandle.Alloc(wdata, GCHandleType.Pinned);
int result = H5D.write(datasetId, dtype, H5S.ALL,
H5S.ALL, H5P.DEFAULT, hnd.AddrOfPinnedObject());
hnd.Free();
H5T.close(dtype);
H5D.close(datasetId);
H5S.close(spaceId);
return(result);
}
public static int WriteUnicodeString(long groupId, string name, string str, H5T.str_t strPad = H5T.str_t.SPACEPAD)
{
byte[] wdata = Hdf5Utils.StringToByte(str);
long spaceId = H5S.create(H5S.class_t.SCALAR);
long dtype = H5T.create(H5T.class_t.STRING, new IntPtr(wdata.Length));
H5T.set_cset(dtype, Hdf5Utils.GetCharacterSet(Settings.CharacterSetType));
H5T.set_strpad(dtype, strPad);
long datasetId = H5D.create(groupId, Hdf5Utils.NormalizedName(name), dtype, spaceId);
GCHandle hnd = GCHandle.Alloc(wdata, GCHandleType.Pinned);
int result = H5D.write(datasetId, dtype, H5S.ALL,
H5S.ALL, H5P.DEFAULT, hnd.AddrOfPinnedObject());
hnd.Free();
H5T.close(dtype);
H5D.close(datasetId);
H5S.close(spaceId);
return(result);
}
public static void WriteHdfAttribute(H5ObjectWithAttributes fileOrdatasetId, HDFAttributeDef hDFAttributeDef)
{
H5DataSpaceId dataSpaceId = H5S.create_simple(1, new long[] { (long)hDFAttributeDef.Size });
H5DataTypeId dataTypeId = null;
H5AttributeId attributeId = null;
try
{
switch (Type.GetTypeCode(hDFAttributeDef.Type))
{
case TypeCode.Byte:
dataTypeId = H5T.copy(H5T.H5Type.STD_U8LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <byte> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.Char:
dataTypeId = H5T.copy(H5T.H5Type.STD_U8LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <char> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.Double:
//dataTypeId = H5T.copy(H5T.H5Type.IEEE_F64BE);
dataTypeId = H5T.copy(H5T.H5Type.IEEE_F64LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <double> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.Int16:
dataTypeId = H5T.copy(H5T.H5Type.STD_I16LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <Int16> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.Int32:
dataTypeId = H5T.copy(H5T.H5Type.STD_I32LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <Int32> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.Int64:
dataTypeId = H5T.copy(H5T.H5Type.STD_I64LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <Int64> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.Object:
dataTypeId = H5T.copy(H5T.H5Type.STD_REF_OBJ);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <object> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.Single:
dataTypeId = H5T.copy(H5T.H5Type.IEEE_F32LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <Single> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.String:
dataTypeId = H5T.copy(H5T.H5Type.C_S1);
dataSpaceId = H5S.create(H5S.H5SClass.SCALAR);
attributeId = WriteStringAttribute(fileOrdatasetId, hDFAttributeDef, dataSpaceId, dataTypeId);
break;
case TypeCode.UInt16:
dataTypeId = H5T.copy(H5T.H5Type.STD_U16LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <UInt16> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.UInt32:
dataTypeId = H5T.copy(H5T.H5Type.STD_U32LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <UInt32> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
case TypeCode.UInt64:
dataTypeId = H5T.copy(H5T.H5Type.STD_U64LE);
attributeId = H5A.create(fileOrdatasetId, hDFAttributeDef.Name, dataTypeId, dataSpaceId);
WriteTAttribute <UInt64> .WriteAttribute(hDFAttributeDef, dataTypeId, attributeId);
break;
}
}
catch (Exception ex)
{
int i = 9;
int j = i;
}
finally
{
if (attributeId != null)
{
H5A.close(attributeId);
}
}
}
public static void WriteLabelWorkingSet(long fileId_inp, bool overwrite_inp)
{
var LabelClassInfos = Labeling.GetAllIdsNamesAndMaterials();
int status = 0;
ulong[] dims = new ulong[2];
dims[0] = 2;
dims[1] = (ulong)LabelClassInfos.Count;
long group_id = 0;
if (overwrite_inp)
{
group_id = H5G.open(fileId_inp, "labelWorkingSet");
}
else
{
group_id = H5G.create(fileId_inp, "labelWorkingSet");
}
for (int i = 0; i < LabelClassInfos.Count; i++)
{
GCHandle labelID = GCHandle.Alloc(LabelClassInfos.ElementAt(i).Key, GCHandleType.Pinned);
string labelClassName = LabelClassInfos.ElementAt(i).Value.Item1;
long attr_id = H5A.open(group_id, labelClassName);
if (attr_id >= 0)
{
//attribute exists
status = H5A.write(attr_id, H5T.NATIVE_UINT32, labelID.AddrOfPinnedObject());
}
else
{
//attribute has to be created
attr_id = H5A.create(group_id, LabelClassInfos.ElementAt(i).Value.Item1, H5T.NATIVE_UINT32, H5S.create(H5S.class_t.SCALAR));
status = H5A.write(attr_id, H5T.NATIVE_UINT32, labelID.AddrOfPinnedObject());
}
status = H5A.close(attr_id);
}
status = H5G.close(group_id);
}
public static bool WriteVariableStringAttribute(hid_t hid, string key, IEnumerable <string> values, bool utf8)
{
if (key == null)
{
throw new ArgumentNullException("key");
}
if (values == null)
{
throw new ArgumentNullException("values");
}
var exists = H5A.exists(hid, key);
if (exists < 0)
{
throw new Exception("H5A.exists failed");
}
if (exists == 0) // Attribute doesn't exist
{
#if true
var type = H5T.create(H5T.class_t.STRING, H5T.VARIABLE);
if (type < 0)
{
throw new Exception("Failed to create string type");
}
#else
var type = H5T.copy(H5T.C_S1);
if (type < 0)
{
throw new Exception("Failed to create string type");
}
if (H5T.set_size(type, H5T.VARIABLE) < 0)
{
H5T.close(type);
throw new Exception("Failed to set type size");
}
#endif
if (utf8)
{
if (H5T.set_cset(type, H5T.cset_t.UTF8) < 0)
{
H5T.close(type);
throw new Exception("Failed to set cset");
}
}
if (H5T.set_strpad(type, H5T.str_t.NULLTERM) < 0)
{
H5T.close(type);
throw new Exception("Failed to set strpad");
}
var space = values.Count() == 1 ? H5S.create(H5S.class_t.SCALAR)
: H5S.create_simple(1, new ulong[1] {
(ulong)values.Count()
}, null);
if (space < 0)
{
H5T.close(type);
throw new Exception("Failed to create data space");
}
var attribute = H5A.create(hid, key, type, space);
H5S.close(space);
if (attribute < 0)
{
H5T.close(type);
throw new Exception(string.Format("Failed to create attribute \"{0}\"", key));
}
var pinnedObjects = new PinnedObject[values.Count()];
var data = new IntPtr[values.Count()];
int count = 0;
foreach (string str in values)
{
var bytes = str.ToBytes(utf8);
pinnedObjects[count] = new PinnedObject(bytes);
data[count] = pinnedObjects[count];
count += 1;
}
H5A.write(attribute, type, new PinnedObject(data));
H5T.close(type);
H5A.close(attribute);
}
else
{
// Attribute exists.
var attribute = H5A.open(hid, key);
if (attribute < 0)
{
throw new Exception(string.Format("Failed to open attribute \"{0}\"", key));
}
var type = H5A.get_type(attribute);
if (type < 0)
{
H5A.close(attribute);
throw new Exception("Failed to get data type");
}
var pinnedObjects = new PinnedObject[values.Count()];
var data = new IntPtr[values.Count()];
int count = 0;
foreach (string str in values)
{
var bytes = str.ToBytes(utf8);
pinnedObjects[count] = new PinnedObject(bytes);
data[count] = pinnedObjects[count];
count += 1;
}
H5A.write(attribute, type, new PinnedObject(data));
H5T.close(type);
H5A.close(attribute);
}
return(true);
}
public static void ClassInit(TestContext testContext)
{
// create test files which persists across file tests
m_v0_class_file = Utilities.H5TempFile(ref m_v0_class_file_name,
H5F.libver_t.EARLIEST);
Assert.IsTrue(m_v0_class_file >= 0);
m_v2_class_file = Utilities.H5TempFile(ref m_v2_class_file_name);
Assert.IsTrue(m_v2_class_file >= 0);
m_space_null = H5S.create(H5S.class_t.NULL);
Assert.IsTrue(m_space_null >= 0);
m_space_scalar = H5S.create(H5S.class_t.SCALAR);
Assert.IsTrue(m_space_scalar >= 0);
// create two datasets of the extended ASCII character set
// store as H5T.FORTRAN_S1 -> space padding
hsize_t[] dims = { 256 };
hid_t space = H5S.create_simple(1, dims, null);
m_v0_ascii_dset = H5D.create(m_v0_class_file, "ASCII",
H5T.FORTRAN_S1, space);
m_v2_ascii_dset = H5D.create(m_v2_class_file, "ASCII",
H5T.FORTRAN_S1, space);
Assert.IsTrue(H5S.close(space) >= 0);
// we write from C and must provide null-terminated strings
byte[] wdata = new byte[512];
for (int i = 0; i < 256; ++i)
{
wdata[2 * i] = (byte)i;
}
hid_t mem_type = H5T.copy(H5T.C_S1);
Assert.IsTrue(H5T.set_size(mem_type, new IntPtr(2)) >= 0);
GCHandle hnd = GCHandle.Alloc(wdata, GCHandleType.Pinned);
Assert.IsTrue(H5D.write(m_v0_ascii_dset, mem_type, H5S.ALL,
H5S.ALL, H5P.DEFAULT, hnd.AddrOfPinnedObject()) >= 0);
Assert.IsTrue(H5D.write(m_v2_ascii_dset, mem_type, H5S.ALL,
H5S.ALL, H5P.DEFAULT, hnd.AddrOfPinnedObject()) >= 0);
hnd.Free();
Assert.IsTrue(H5T.close(mem_type) >= 0);
// create UTF-8 encoded test datasets
hid_t dtype = H5T.create(H5T.class_t.STRING, H5T.VARIABLE);
Assert.IsTrue(H5T.set_cset(dtype, H5T.cset_t.UTF8) >= 0);
Assert.IsTrue(H5T.set_strpad(dtype, H5T.str_t.SPACEPAD) >= 0);
hid_t dspace = H5S.create_simple(1,
new hsize_t[] { (hsize_t)m_utf8strings.Count }, null);
m_v0_utf8_dset = H5D.create(m_v0_class_file, "UTF-8", dtype, dspace);
Assert.IsTrue(m_v0_utf8_dset >= 0);
m_v2_utf8_dset = H5D.create(m_v2_class_file, "UTF-8", dtype, dspace);
Assert.IsTrue(m_v2_utf8_dset >= 0);
GCHandle[] hnds = new GCHandle[m_utf8strings.Count];
IntPtr[] wdata1 = new IntPtr[m_utf8strings.Count];
for (int i = 0; i < m_utf8strings.Count; ++i)
{
hnds[i] = GCHandle.Alloc(
Encoding.UTF8.GetBytes((string)m_utf8strings[i]),
GCHandleType.Pinned);
wdata1[i] = hnds[i].AddrOfPinnedObject();
}
hnd = GCHandle.Alloc(wdata1, GCHandleType.Pinned);
Assert.IsTrue(H5D.write(m_v0_utf8_dset, dtype, H5S.ALL, H5S.ALL,
H5P.DEFAULT, hnd.AddrOfPinnedObject()) >= 0);
Assert.IsTrue(H5D.write(m_v2_utf8_dset, dtype, H5S.ALL, H5S.ALL,
H5P.DEFAULT, hnd.AddrOfPinnedObject()) >= 0);
hnd.Free();
for (int i = 0; i < m_utf8strings.Count; ++i)
{
hnds[i].Free();
}
Assert.IsTrue(H5S.close(dspace) >= 0);
Assert.IsTrue(H5T.close(dtype) >= 0);
}
