/// <summary>
/// Creates an instance of <see cref="GeneticSnpResults"/> with specified
/// parameters.
/// </summary>
///
/// <param name="when">The date and time of the SNP test.</param>
///
/// <param name="genomeBuild">The genome build that defines the SNPs.</param>
///
/// <param name="chromosome">The chromosome on which the SNPs are located.</param>
///
/// <param name="numberingScheme">The numbering scheme used for positions.</param>
///
/// <exception cref="ArgumentNullException">
/// If <paramref name="when"/> is <b> null</b>.
/// </exception>
///
/// <exception cref="ArgumentException">
/// If <paramref name="genomeBuild"/> or <paramref name="chromosome" />
/// is <b>null</b> or empty, or <paramref name="numberingScheme"/> is not 0 or 1.
/// </exception>
///
/// <exception cref="ArgumentOutOfRangeException" >
/// The <paramref name="numberingScheme" /> is neither zero based scheme nor one
/// based scheme.
/// </exception>
///
public GeneticSnpResults(
ApproximateDateTime when,
string genomeBuild,
string chromosome,
GenomeNumberingScheme numberingScheme)
: base(TypeId)
{
When = when;
GenomeBuild = genomeBuild;
Chromosome = chromosome;
NumberingScheme = numberingScheme;
Sections |= ThingSections.BlobPayload;
}
/// <summary>
/// Populates this <see cref="GeneticSnpResults"/> instance from the data
/// in the XML.
/// </summary>
///
/// <param name="typeSpecificXml">
/// The XML to get the genetic snp result data from.
/// </param>
///
/// <exception cref="InvalidOperationException">
/// If the first node in <paramref name="typeSpecificXml"/> is not
/// an "genetic-snp-results" node.
/// </exception>
///
protected override void ParseXml(IXPathNavigable typeSpecificXml)
{
XPathNavigator itemNav =
typeSpecificXml.CreateNavigator().SelectSingleNode("genetic-snp-results");
Validator.ThrowInvalidIfNull(itemNav, "GeneticSnpResultsUnexpectedNode");
// <when> mandatory
_when = new ApproximateDateTime();
_when.ParseXml(itemNav.SelectSingleNode("when"));
// <genome-build> mandatory
_genomeBuild = itemNav.SelectSingleNode("genome-build").Value;
// <chromosome> mandatory
_chromosome = itemNav.SelectSingleNode("chromosome").Value;
// <numbering-scheme> mandatory
int numberingScheme = itemNav.SelectSingleNode("numbering-scheme").ValueAsInt;
if ((numberingScheme == 0) || (numberingScheme == 1))
{
_numberingScheme = (GenomeNumberingScheme)numberingScheme;
}
else
{
_numberingScheme = GenomeNumberingScheme.Unknown;
}
// ordered-by
_orderedBy =
XPathHelper.GetOptNavValue<Organization>(itemNav, "ordered-by");
// test-provider
_testProvider =
XPathHelper.GetOptNavValue<Organization>(itemNav, "test-provider");
// laboratory-name
_laboratoryName =
XPathHelper.GetOptNavValue<Organization>(itemNav, "laboratory-name");
// annotation-version
_annotationVersion =
XPathHelper.GetOptNavValue(itemNav, "annotation-version");
// dbSNP-build
_dbSnpBuild =
XPathHelper.GetOptNavValue(itemNav, "dbSNP-build");
// platform
_platform =
XPathHelper.GetOptNavValue(itemNav, "platform");
}
/// <summary>
/// Creates an instance of <see cref="GeneticSnpResults"/> with specified
/// parameters.
/// </summary>
///
/// <param name="when">The date and time of the SNP test.</param>
///
/// <param name="genomeBuild">The genome build that defines the SNPs.</param>
///
/// <param name="chromosome">The chromosome on which the SNPs are located.</param>
///
/// <param name="numberingScheme">The numbering scheme used for positions.</param>
///
/// <exception cref="ArgumentNullException">
/// If <paramref name="when"/> is <b> null</b>.
/// </exception>
///
/// <exception cref="ArgumentException">
/// If <paramref name="genomeBuild"/> or <paramref name="chromosome" />
/// is <b>null</b> or empty, or <paramref name="numberingScheme"/> is not 0 or 1.
/// </exception>
///
/// <exception cref="ArgumentOutOfRangeException" >
/// The <paramref name="numberingScheme" /> is neither zero based scheme nor one
/// based scheme.
/// </exception>
///
public GeneticSnpResults(
ApproximateDateTime when,
string genomeBuild,
string chromosome,
GenomeNumberingScheme numberingScheme)
: base(TypeId)
{
When = when;
GenomeBuild = genomeBuild;
Chromosome = chromosome;
NumberingScheme = numberingScheme;
Sections |= HealthRecordItemSections.BlobPayload;
}
