/// <summary>
/// Serializes the presentation state of the given images to the current state object.
/// </summary>
/// <param name="images">The images whose presentation states are to be serialized.</param>
/// <exception cref="InvalidOperationException">Thrown if the presentation state has already been serialized to a file.</exception>
public override void Serialize(IEnumerable <IPresentationImage> images)
{
CheckSerialized(false);
// create UIDs if needed now
this.PresentationSeriesInstanceUid = CreateUid(this.PresentationSeriesInstanceUid);
this.PresentationSopInstanceUid = CreateUid(this.PresentationSopInstanceUid);
_serialized = true;
var specificCharacterSet = _specificCharacterSet ?? string.Empty;
DataSet.SpecificCharacterSet = specificCharacterSet;
DataSet[DicomTags.SpecificCharacterSet].SetStringValue(specificCharacterSet);
GeneralEquipmentModuleIod generalEquipmentModule = new GeneralEquipmentModuleIod(this.DataSet);
generalEquipmentModule.Manufacturer = this.Manufacturer ?? string.Empty; // this one is type 2 - all other GenEq attributes are type 3
generalEquipmentModule.ManufacturersModelName = string.IsNullOrEmpty(this.ManufacturersModelName) ? null : this.ManufacturersModelName;
generalEquipmentModule.DeviceSerialNumber = string.IsNullOrEmpty(this.DeviceSerialNumber) ? null : this.DeviceSerialNumber;
generalEquipmentModule.SoftwareVersions = string.IsNullOrEmpty(this.SoftwareVersions) ? null : this.SoftwareVersions;
generalEquipmentModule.InstitutionName = string.IsNullOrEmpty(this.Institution.Name) ? null : this.Institution.Name;
generalEquipmentModule.InstitutionAddress = string.IsNullOrEmpty(this.Institution.Address) ? null : this.Institution.Address;
generalEquipmentModule.InstitutionalDepartmentName = string.IsNullOrEmpty(this.Institution.DepartmentName) ? null : this.Institution.DepartmentName;
generalEquipmentModule.StationName = string.IsNullOrEmpty(this.StationName) ? null : this.StationName;
GeneralSeriesModuleIod generalSeriesModule = new GeneralSeriesModuleIod(this.DataSet);
generalSeriesModule.InitializeAttributes();
generalSeriesModule.SeriesDateTime = this.PresentationSeriesDateTime;
generalSeriesModule.SeriesDescription = this.PresentationContentLabel;
generalSeriesModule.SeriesInstanceUid = this.PresentationSeriesInstanceUid;
generalSeriesModule.SeriesNumber = this.PresentationSeriesNumber;
PresentationSeriesModuleIod presentationSeriesModule = new PresentationSeriesModuleIod(this.DataSet);
presentationSeriesModule.InitializeAttributes();
presentationSeriesModule.Modality = Modality.PR;
SopCommonModuleIod sopCommonModule = new SopCommonModuleIod(this.DataSet);
sopCommonModule.SopInstanceUid = this.PresentationSopInstanceUid;
sopCommonModule.SopClassUid = this.PresentationSopClass.Uid;
PresentationStateIdentificationModuleIod presentationStateIdentificationModule = new PresentationStateIdentificationModuleIod(this.DataSet);
presentationStateIdentificationModule.InitializeAttributes();
presentationStateIdentificationModule.ContentLabel = this.PresentationContentLabel;
presentationStateIdentificationModule.InstanceNumber = this.PresentationInstanceNumber;
presentationStateIdentificationModule.PresentationCreationDateTime = Platform.Time;
PerformSerialization(images);
_dicomFile.SourceApplicationEntityTitle = this.SourceAETitle;
_dicomFile.MediaStorageSopClassUid = this.PresentationSopClassUid;
_dicomFile.MediaStorageSopInstanceUid = this.PresentationSopInstanceUid;
}
public RawDataIod(IDicomAttributeProvider dicomAttributeProvider)
{
_dicomAttributeProvider = dicomAttributeProvider;
_patientModule = new PatientModuleIod(_dicomAttributeProvider);
_clinicalTrialSubjectModule = new ClinicalTrialSubjectModuleIod(_dicomAttributeProvider);
_generalStudyModule = new GeneralStudyModuleIod(_dicomAttributeProvider);
_patientStudyModule = new PatientStudyModuleIod(_dicomAttributeProvider);
_clinicalTrialStudyModule = new ClinicalTrialStudyModuleIod(_dicomAttributeProvider);
_generalSeriesModule = new GeneralSeriesModuleIod(_dicomAttributeProvider);
_clinicalTrialSeriesModule = new ClinicalTrialSeriesModuleIod(_dicomAttributeProvider);
_generalEquipmentModule = new GeneralEquipmentModuleIod(_dicomAttributeProvider);
_acquisitionContextModule = new AcquisitionContextModuleIod(_dicomAttributeProvider);
_rawDataModule = new RawDataModule(_dicomAttributeProvider);
_sopCommonModule = new SopCommonModuleIod(_dicomAttributeProvider);
}
private static void FillGeneralSeriesModule(IDicomAttributeProvider target, IDicomAttributeProvider source, SeriesInfo seriesInfo)
{
var sourceModule = new GeneralSeriesModuleIod(source);
var targetModule = new GeneralSeriesModuleIod(target);
targetModule.Modality = sourceModule.Modality;
targetModule.PatientPosition = string.Empty;
targetModule.SeriesDateTime = seriesInfo.SeriesDateTime;
targetModule.SeriesDescription = seriesInfo.SeriesDescription;
targetModule.SeriesInstanceUid = seriesInfo.SeriesInstanceUid;
targetModule.SeriesNumber = seriesInfo.SeriesNumber;
targetModule.AnatomicalOrientationType = sourceModule.AnatomicalOrientationType;
// body part examined and (series) laterality are not filled in because they may vary for multiple SC images
// we'll use Image Laterality instead, and BPE is optional anyway
}
/// <summary>
/// Serializes the presentation state of the given images to the current state object.
/// </summary>
/// <param name="images">The images whose presentation states are to be serialized.</param>
/// <exception cref="InvalidOperationException">Thrown if the presentation state has already been serialized to a file.</exception>
public override void Serialize(IEnumerable <IPresentationImage> images)
{
AssertNotSerialized();
// create UIDs if needed now
PresentationSeriesInstanceUid = CreateUid(PresentationSeriesInstanceUid);
PresentationSopInstanceUid = CreateUid(PresentationSopInstanceUid);
_serialized = true;
var imageList = images.ToList();
var sopInstanceFactory = new PrototypeSopInstanceFactory {
Institution = Institution, StationName = StationName, SpecificCharacterSet = SpecificCharacterSet
};
sopInstanceFactory.InitializeDataSet(imageList.OfType <IImageSopProvider>().First().ImageSop.DataSource, DataSet);
GeneralSeriesModuleIod generalSeriesModule = new GeneralSeriesModuleIod(DataSet);
generalSeriesModule.InitializeAttributes();
generalSeriesModule.SeriesDateTime = PresentationSeriesDateTime;
generalSeriesModule.SeriesDescription = PresentationContentLabel;
generalSeriesModule.SeriesInstanceUid = PresentationSeriesInstanceUid;
generalSeriesModule.SeriesNumber = PresentationSeriesNumber;
PresentationSeriesModuleIod presentationSeriesModule = new PresentationSeriesModuleIod(DataSet);
presentationSeriesModule.InitializeAttributes();
presentationSeriesModule.Modality = Modality.PR;
SopCommonModuleIod sopCommonModule = new SopCommonModuleIod(DataSet);
sopCommonModule.SopInstanceUid = PresentationSopInstanceUid;
sopCommonModule.SopClassUid = PresentationSopClass.Uid;
PresentationStateIdentificationModuleIod presentationStateIdentificationModule = new PresentationStateIdentificationModuleIod(DataSet);
presentationStateIdentificationModule.InitializeAttributes();
presentationStateIdentificationModule.ContentLabel = PresentationContentLabel;
presentationStateIdentificationModule.InstanceNumber = PresentationInstanceNumber;
presentationStateIdentificationModule.PresentationCreationDateTime = Platform.Time;
PerformSerialization(imageList);
_dicomFile.SourceApplicationEntityTitle = SourceAETitle;
_dicomFile.MediaStorageSopClassUid = PresentationSopClassUid;
_dicomFile.MediaStorageSopInstanceUid = PresentationSopInstanceUid;
}
public void TestGeneralSeriesModuleIod()
{
var dicomFile = new DicomFile();
var module = new GeneralSeriesModuleIod(dicomFile.DataSet);
Assert.AreEqual(module.AnatomicalOrientationType, AnatomicalOrientationType.None);
module.AnatomicalOrientationType = AnatomicalOrientationType.Quadruped;
Assert.AreEqual(module.AnatomicalOrientationType, AnatomicalOrientationType.Quadruped);
dicomFile.Save("TestGeneralSeriesModuleIod.dcm");
var reloadedDicomFile = new DicomFile("TestGeneralSeriesModuleIod.dcm");
reloadedDicomFile.Load();
var realoadedModule = new PatientModuleIod(reloadedDicomFile.DataSet);
Assert.AreEqual(module.AnatomicalOrientationType, AnatomicalOrientationType.Quadruped);
}
/// <summary>
/// Initializes a new instance of the <see cref="ScImageIod"/> class.
/// </summary>
/// <param name="dicomAttributeProvider">The DICOM attribute provider.</param>
public ScImageIod(IDicomAttributeProvider dicomAttributeProvider)
{
_dicomAttributeProvider = dicomAttributeProvider;
_patientModule = new PatientModuleIod(_dicomAttributeProvider);
_clinicalTrialSubjectModule = new ClinicalTrialSubjectModuleIod(_dicomAttributeProvider);
_generalStudyModule = new GeneralStudyModuleIod(_dicomAttributeProvider);
_patientStudyModule = new PatientStudyModuleIod(_dicomAttributeProvider);
_clinicalTrialStudyModule = new ClinicalTrialStudyModuleIod(_dicomAttributeProvider);
_generalSeriesModule = new GeneralSeriesModuleIod(_dicomAttributeProvider);
_clinicalTrialSeriesModule = new ClinicalTrialSeriesModuleIod(_dicomAttributeProvider);
_generalEquipmentModule = new GeneralEquipmentModuleIod(_dicomAttributeProvider);
_scEquipmentModule = new ScEquipmentModuleIod(_dicomAttributeProvider);
_generalImageModule = new GeneralImageModuleIod(_dicomAttributeProvider);
_imagePixelModule = new ImagePixelMacroIod(_dicomAttributeProvider);
_deviceModule = new DeviceModuleIod(_dicomAttributeProvider);
_scImageModule = new ScImageModuleIod(_dicomAttributeProvider);
_overlayPlaneModule = new OverlayPlaneModuleIod(_dicomAttributeProvider);
_modalityLutModule = new ModalityLutModuleIod(_dicomAttributeProvider);
_voiLutModule = new VoiLutModuleIod(_dicomAttributeProvider);
_iccProfileModule = new IccProfileModuleIod(_dicomAttributeProvider);
_sopCommonModule = new SopCommonModuleIod(_dicomAttributeProvider);
}
public SegmentationDocumentIod(IDicomAttributeProvider dicomAttributeProvider)
{
_dicomAttributeProvider = dicomAttributeProvider;
_patientModule = new PatientModuleIod(_dicomAttributeProvider);
_clinicalTrialSubjectModule = new ClinicalTrialSubjectModuleIod(_dicomAttributeProvider);
_generalStudyModule = new GeneralStudyModuleIod(_dicomAttributeProvider);
_patientStudyModule = new PatientStudyModuleIod(_dicomAttributeProvider);
_clinicalTrialStudyModule = new ClinicalTrialStudyModuleIod(_dicomAttributeProvider);
_generalSeriesModule = new GeneralSeriesModuleIod(_dicomAttributeProvider);
_segmentationSeriesModule = new SegmentationSeriesModuleIod(_dicomAttributeProvider);
_clinicalTrialSeriesModule = new ClinicalTrialSeriesModuleIod(_dicomAttributeProvider);
_frameOfReferenceModule = new FrameOfReferenceModuleIod(_dicomAttributeProvider);
_generalEquipmentModule = new GeneralEquipmentModuleIod(_dicomAttributeProvider);
//_enhanceGeneralEquipmentModule = new EnhanceGeneralEquipmentModuleIod(_dicomAttributeProvider);
_generalImageModule = new GeneralImageModuleIod(_dicomAttributeProvider);
_imagePixelModule = new ImagePixelMacroIod(_dicomAttributeProvider);
_segmentationImageModule = new SegmentationImageModuleIod(_dicomAttributeProvider);
_multiFrameFunctionalGroupsModule = new MultiFrameFunctionalGroupsModuleIod(_dicomAttributeProvider);
_multiFrameDimensionModule = new MultiFrameDimensionModuleIod(_dicomAttributeProvider);
_specimenModule = new SpecimenModuleIod(_dicomAttributeProvider);
_commonInstanceReferenceModule = new CommonInstanceReferenceModuleIod(_dicomAttributeProvider);
_sopCommonModule = new SopCommonModuleIod(_dicomAttributeProvider);
_frameExtractionModule = new FrameExtractionModuleIod(_dicomAttributeProvider);
}