public PHRPReaderParser(string synopsisFilePath, FragmentLadderOptions fragLadderOptions)
{
m_fragLadderOptions = fragLadderOptions;
m_fragLadderOptions.modificationList.Clear();
using (var reader = new StreamReader(synopsisFilePath))
{
m_firstLine = reader.ReadLine().Split('\t');
for (int i = 0; i < m_firstLine.Length; i++)
{
if (m_firstLine[i] == "Peptide")
{
m_peptideColumnIndex = i;
break;
}
}
}
var oStartupOptions = new clsPHRPStartupOptions
{
LoadModsAndSeqInfo = true,
LoadMSGFResults = true,
LoadScanStatsData = false,
MaxProteinsPerPSM = 100
};
m_reader = new clsPHRPReader(synopsisFilePath, oStartupOptions);
//m_reader.FastReadMode = true;
m_reader.SkipDuplicatePSMs = true;
m_parser = m_reader.PHRPParser;
}
public FragmentLadderView(Manager manager)
{
InitializeComponent();
m_manager = manager;
m_fragmentLadderOptions = new Options.FragmentLadderOptions();
m_clearModifications = false;
m_currentlyDrawing = false;
markIonSeriesHeaders();
}
