public void TestUIDTableExists()
{
var db = GetCleanedServer(DatabaseType.MicrosoftSQLServer);
// set it to an empty database
var eds = new ExternalDatabaseServer(CatalogueRepository, "UID server", null);
eds.SetProperties(db);
var anon = new FoDicomAnonymiser();
anon.UIDMappingServer = eds;
var ex = Assert.Throws <Exception>(() => anon.Check(new ThrowImmediatelyCheckNotifier()
{
ThrowOnWarning = true
}));
StringAssert.AreEqualIgnoringCase("UIDMappingServer is not set up yet", ex.Message);
anon.Check(new AcceptAllCheckNotifier());
// no warnings after it has been created
Assert.DoesNotThrow(() => anon.Check(new ThrowImmediatelyCheckNotifier()
{
ThrowOnWarning = true
}));
}
public void TestAnonymisingDataset(Type putterType, bool keepDates)
{
var uidMapDb = GetCleanedServer(DatabaseType.MicrosoftSQLServer, "TESTUIDMapp");
MasterDatabaseScriptExecutor e = new MasterDatabaseScriptExecutor(uidMapDb);
var patcher = new SMIDatabasePatcher();
e.CreateAndPatchDatabase(patcher, new AcceptAllCheckNotifier());
var eds = new ExternalDatabaseServer(CatalogueRepository, "eds", patcher);
eds.SetProperties(uidMapDb);
Dictionary <DicomTag, string> thingThatShouldDisappear = new Dictionary <DicomTag, string>
{
//Things we would want to disappear
{ DicomTag.PatientName, "Moscow" },
{ DicomTag.PatientBirthDate, "20010101" },
{ DicomTag.StudyDescription, "Frank has lots of problems, he lives at 60 Pancake road" },
{ DicomTag.SeriesDescription, "Coconuts" },
{ DicomTag.StudyDate, "20020101" },
};
Dictionary <DicomTag, string> thingsThatShouldRemain = new Dictionary <DicomTag, string>
{
//Things we would want to remain
//{DicomTag.SmokingStatus,"YES"},
};
var dicom = new DicomDataset
{
{ DicomTag.SOPInstanceUID, "123.4.4" },
{ DicomTag.SeriesInstanceUID, "123.4.5" },
{ DicomTag.StudyInstanceUID, "123.4.6" },
{ DicomTag.SOPClassUID, "1" },
};
foreach (var(key, value) in thingThatShouldDisappear)
{
dicom.AddOrUpdate(key, value);
}
foreach (var(key, value) in thingsThatShouldRemain)
{
dicom.AddOrUpdate(key, value);
}
dicom.AddOrUpdate(DicomTag.StudyDate, new DateTime(2002, 01, 01));
var fi = new FileInfo(Path.Combine(TestContext.CurrentContext.WorkDirectory, "madness.dcm"));
DicomFile df = new DicomFile(dicom);
df.Save(fi.FullName);
var dt = new DataTable();
dt.Columns.Add("Filepath");
dt.Columns.Add("SOPInstanceUID");
dt.Columns.Add("SeriesInstanceUID");
dt.Columns.Add("StudyInstanceUID");
dt.Columns.Add("Pat");
//note we don't have series
dt.Rows.Add(fi.Name, "123.4.4", "123.4.5", "123.4.6", "Hank");
var anonymiser = new FoDicomAnonymiser();
IExtractCommand cmd = MockExtractionCommand();
//give the mock to anonymiser
anonymiser.PreInitialize(cmd, new ThrowImmediatelyDataLoadEventListener());
anonymiser.PutterType = putterType;
anonymiser.ArchiveRootIfAny = TestContext.CurrentContext.WorkDirectory;
anonymiser.RelativeArchiveColumnName = "Filepath";
anonymiser.UIDMappingServer = eds;
anonymiser.RetainDates = keepDates;
var anoDt = anonymiser.ProcessPipelineData(dt, new ThrowImmediatelyDataLoadEventListener(), new GracefulCancellationToken());
Assert.AreEqual(1, anoDt.Rows.Count);
//Data table should contain new UIDs
Assert.AreNotEqual("123.4.4", anoDt.Rows[0]["SOPInstanceUID"]);
Assert.AreEqual(56, anoDt.Rows[0]["SOPInstanceUID"].ToString().Length);
Assert.AreNotEqual("123.4.6", anoDt.Rows[0]["StudyInstanceUID"]);
Assert.AreEqual(56, anoDt.Rows[0]["StudyInstanceUID"].ToString().Length);
FileInfo expectedFile = null;
if (putterType == typeof(PutInRoot))
{
expectedFile = new FileInfo(Path.Combine(TestContext.CurrentContext.WorkDirectory, "Images", anoDt.Rows[0]["SOPInstanceUID"] + ".dcm"));
}
if (putterType == typeof(PutInReleaseIdentifierSubfolders))
{
expectedFile = new FileInfo(Path.Combine(TestContext.CurrentContext.WorkDirectory, "Images", "Hank", anoDt.Rows[0]["SOPInstanceUID"] + ".dcm"));
}
if (putterType == typeof(PutInUidSeriesFolders))
{
expectedFile = new FileInfo(Path.Combine(TestContext.CurrentContext.WorkDirectory, "Images", "Hank", anoDt.Rows[0]["SeriesInstanceUID"].ToString(), anoDt.Rows[0]["SOPInstanceUID"] + ".dcm"));
}
if (putterType == typeof(PutInUidStudySeriesFolders))
{
expectedFile = new FileInfo(Path.Combine(TestContext.CurrentContext.WorkDirectory, "Images", "Hank", anoDt.Rows[0]["StudyInstanceUID"].ToString(), anoDt.Rows[0]["SeriesInstanceUID"].ToString(), anoDt.Rows[0]["SOPInstanceUID"] + ".dcm"));
}
Assert.IsTrue(expectedFile.Exists);
var anoDicom = DicomFile.Open(expectedFile.FullName);
Assert.AreEqual("Hank", anoDicom.Dataset.GetValue <string>(DicomTag.PatientID, 0));
Assert.AreEqual(anoDt.Rows[0]["SOPInstanceUID"], anoDicom.Dataset.GetValue <string>(DicomTag.SOPInstanceUID, 0));
Assert.AreEqual(56, anoDicom.Dataset.GetValue <string>(DicomTag.SeriesInstanceUID, 0).Length);
Assert.AreEqual(anoDt.Rows[0]["StudyInstanceUID"], anoDicom.Dataset.GetValue <string>(DicomTag.StudyInstanceUID, 0));
foreach (var(key, _) in thingThatShouldDisappear)
{
//if it chopped out the entire tag
if (!anoDicom.Dataset.Contains(key))
{
continue;
}
if (anoDicom.Dataset.GetValueCount(key) == 0)
{
continue;
}
var value = anoDicom.Dataset.GetSingleValue <string>(key);
switch (value)
{
//allowed values
case "ANONYMOUS": continue;
//anonymous date
case "00010101": Assert.IsFalse(keepDates);
continue;
case "20020101": Assert.IsTrue(keepDates);
continue;
default: Assert.Fail("Unexpected value for " + key + ":" + value);
break;
}
}
foreach (var(key, value) in thingsThatShouldRemain)
{
Assert.AreEqual(value, anoDicom.Dataset.GetValue <string>(key, 0));
}
}
