public void Arrow()
{
Assert.ThrowsException <FastaException>(() =>
{
FastaStats.Calculate(StringToStream(">"));
});
}
public void NoHeader()
{
Assert.ThrowsException <FastaException>(() =>
{
FastaStats.Calculate(StringToStream("no header\n"));
});
}
public void Newline()
{
Assert.ThrowsException <FastaException>(() =>
{
FastaStats.Calculate(StringToStream("\n"));
});
}
public void Empty()
{
var stats = FastaStats.Calculate(StringToStream(""));
Assert.AreEqual(stats, new FastaStats
{
NumSeqs = 0,
NumBases = 0
});
}
public void MinlenGreaterThanAll()
{
var stats = FastaStats.Calculate(StringToStream(">header1\nATGC\nAGG\n>header2\nTT\n"), 8);
Assert.AreEqual(stats, new FastaStats
{
NumSeqs = 0,
NumBases = 0
});
}
public void MinlenLessThanAll()
{
var stats = FastaStats.Calculate(StringToStream(">header1\nATGC\nAGG\n>header2\nTT\n"), 2);
Assert.AreEqual(stats, new FastaStats
{
NumSeqs = 2,
NumBases = 9,
MinLength = 2,
Average = 4,
MaxLength = 7
});
}
public void Single()
{
var stats = FastaStats.Calculate(StringToStream(">header\nATGC\nA"));
Assert.AreEqual(stats, new FastaStats
{
NumSeqs = 1,
NumBases = 5,
MinLength = 5,
Average = 5,
MaxLength = 5
});
}
public void MinlenGreaterThanOne()
{
var stats = FastaStats.Calculate(StringToStream(">header1\nATGC\nAGG\n>header2\nTT\n"), 3);
Assert.AreEqual(stats, new FastaStats
{
NumSeqs = 1,
NumBases = 7,
MinLength = 7,
Average = 7,
MaxLength = 7
});
}
