public void AuditLogReFetch_WhenAuditLogIsNull()
{
var builder = new ExtractableCohortAuditLogBuilder();
var moqCohort = Mock.Of <IExtractableCohort>(e => e.AuditLog == null);
Assert.IsNull(builder.GetObjectIfAny(moqCohort, RepositoryLocator));
}
public void AuditLogReFetch_WhenAuditLogIsRubbish()
{
var builder = new ExtractableCohortAuditLogBuilder();
var moqCohort = Mock.Of <IExtractableCohort>(e => e.AuditLog == "troll doll dur I invented this cohort myself");
Assert.IsNull(builder.GetObjectIfAny(moqCohort, RepositoryLocator));
}
public override void Execute()
{
if (_extractionIdentifierColumn == null)
{
var cata = (ICatalogue)BasicActivator.SelectOne("Select Catalogue to create cohort from", BasicActivator.RepositoryLocator.CatalogueRepository.GetAllObjects<Catalogue>());
if (cata == null)
return;
SetExtractionIdentifierColumn(GetExtractionInformationFromCatalogue(cata));
}
base.Execute();
var auditLogBuilder = new ExtractableCohortAuditLogBuilder();
var request = GetCohortCreationRequest(auditLogBuilder.GetDescription(_extractionIdentifierColumn));
//user choose to cancel the cohort creation request dialogue
if (request == null)
return;
request.ExtractionIdentifierColumn = _extractionIdentifierColumn;
var configureAndExecute = GetConfigureAndExecuteControl(request, "Import column " + _extractionIdentifierColumn + " as cohort and commmit results");
configureAndExecute.Run(BasicActivator.RepositoryLocator, null, null, null);
}
public void AuditLogReFetch_ExtractionInformation()
{
var builder = new ExtractableCohortAuditLogBuilder();
var ei = WhenIHaveA <ExtractionInformation>();
var desc = builder.GetDescription(ei);
var moqCohort = Mock.Of <IExtractableCohort>(e => e.AuditLog == desc);
var ei2 = builder.GetObjectIfAny(moqCohort, RepositoryLocator);
Assert.IsNotNull(ei2);
Assert.IsInstanceOf <ExtractionInformation>(ei2);
Assert.AreEqual(ei, ei2);
}
public void AuditLogReFetch_CohortIdentificationConfiguration()
{
var builder = new ExtractableCohortAuditLogBuilder();
var cic = WhenIHaveA <CohortIdentificationConfiguration>();
var desc = builder.GetDescription(cic);
var moqCohort = Mock.Of <IExtractableCohort>(e => e.AuditLog == desc);
var cic2 = builder.GetObjectIfAny(moqCohort, RepositoryLocator);
Assert.IsNotNull(cic2);
Assert.IsInstanceOf <CohortIdentificationConfiguration>(cic2);
Assert.AreEqual(cic, cic2);
}
public void AuditLogReFetch_FileInfo()
{
var builder = new ExtractableCohortAuditLogBuilder();
var fi = new FileInfo("durdur.txt");
var desc = builder.GetDescription(fi);
var moqCohort = Mock.Of <IExtractableCohort>(e => e.AuditLog == desc);
var fi2 = builder.GetObjectIfAny(moqCohort, RepositoryLocator);
Assert.IsNotNull(fi2);
Assert.IsInstanceOf <FileInfo>(fi2);
Assert.AreEqual(fi.FullName, ((FileInfo)fi2).FullName);
}
public void AuditLogReFetch_WhenSourceIsDeleted()
{
var builder = new ExtractableCohortAuditLogBuilder();
var ei = WhenIHaveA <ExtractionInformation>();
var desc = builder.GetDescription(ei);
var moqCohort = Mock.Of <IExtractableCohort>(e => e.AuditLog == desc);
// delete the source
ei.DeleteInDatabase();
// should now return null
Assert.IsNull(builder.GetObjectIfAny(moqCohort, RepositoryLocator));
}
public override void Execute()
{
base.Execute();
var cic = _cic;
if (cic == null)
{
cic = (CohortIdentificationConfiguration)BasicActivator.SelectOne("Select Cohort Builder Query", BasicActivator.GetAll <CohortIdentificationConfiguration>().ToArray());
}
if (cic == null)
{
return;
}
if (Project == null && BasicActivator.CoreChildProvider is DataExportChildProvider dx)
{
var projAssociations = dx.AllProjectAssociatedCics.Where(c => c.CohortIdentificationConfiguration_ID == cic.ID).ToArray();
if (projAssociations.Length == 1)
{
Project = projAssociations[0].Project;
}
}
var auditLogBuilder = new ExtractableCohortAuditLogBuilder();
var request = GetCohortCreationRequest(auditLogBuilder.GetDescription(cic));
//user choose to cancel the cohort creation request dialogue
if (request == null)
{
return;
}
request.CohortIdentificationConfiguration = cic;
var configureAndExecute = GetConfigureAndExecuteControl(request, "Execute CIC " + cic + " and commmit results");
configureAndExecute.PipelineExecutionFinishedsuccessfully += (s, u) => OnImportCompletedSuccessfully(s, u, cic);
configureAndExecute.Run(BasicActivator.RepositoryLocator, null, null, null);
}
private ExtractableCohort CommitCohortToNewProject(CohortIdentificationConfiguration cic, ExternalCohortTable externalCohortTable, IPipeline cohortCreationPipeline, string projectName, string cohortName, int projectNumber, out Project project)
{
//create a new data extraction Project
project = new Project(_repos.DataExportRepository, projectName);
project.ProjectNumber = projectNumber;
project.ExtractionDirectory = Path.GetTempPath();
project.SaveToDatabase();
//create a cohort
var auditLogBuilder = new ExtractableCohortAuditLogBuilder();
var request = new CohortCreationRequest(project, new CohortDefinition(null, cohortName, 1, projectNumber, externalCohortTable), _repos.DataExportRepository, auditLogBuilder.GetDescription(cic));
request.CohortIdentificationConfiguration = cic;
var engine = request.GetEngine(cohortCreationPipeline, new ThrowImmediatelyDataLoadEventListener());
engine.ExecutePipeline(new GracefulCancellationToken());
return(request.CohortCreatedIfAny);
}
public override void Execute()
{
base.Execute();
FlatFileToLoad flatFile;
//if no explicit file has been chosen
if (_file == null)
{
var file = BasicActivator.SelectFile("Cohort file");
//get user to pick one
if (file == null)
{
return;
}
flatFile = new FlatFileToLoad(file);
}
else
{
flatFile = new FlatFileToLoad(_file);
}
var auditLogBuilder = new ExtractableCohortAuditLogBuilder();
var request = GetCohortCreationRequest(auditLogBuilder.GetDescription(flatFile.File));
//user choose to cancel the cohort creation request dialogue
if (request == null)
{
return;
}
request.FileToLoad = flatFile;
var configureAndExecuteDialog = GetConfigureAndExecuteControl(request, "Uploading File " + flatFile.File.Name);
//add the flat file to the dialog with an appropriate description of what they are trying to achieve
configureAndExecuteDialog.Run(BasicActivator.RepositoryLocator, null, null, null);
}
